Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 DPP3P2-201ENST00000416030 1696 ntBASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 ISG20-202ENST00000379224 540 ntTSL 3 BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 UBE2SP1-201ENST00000450587 669 ntBASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC22.43■■□□□ 1.18
CCDC60Q8IWA6 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 LY6E-205ENST00000519611 635 ntTSL 3 BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 AP006294.2-201ENST00000641667 209 ntBASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC60Q8IWA6 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 MME-217ENST00000616757 1315 ntTSL 5 BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 AL031963.3-201ENST00000606441 850 ntBASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 AC124016.1-201ENST00000609552 612 ntBASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 ME2-216ENST00000639850 2331 ntTSL 5 BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC60Q8IWA6 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 AC008550.1-201ENST00000511500 884 ntBASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 SPIB-206ENST00000596074 847 ntTSL 2 BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC60Q8IWA6 AC092720.2-201ENST00000602388 1665 ntBASIC22.39■■□□□ 1.18
CCDC60Q8IWA6 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CCDC60Q8IWA6 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CCDC60Q8IWA6 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
CCDC60Q8IWA6 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 AC239809.2-201ENST00000415381 517 ntBASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC22.39■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms