Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.67■□□□□ 0.74
PTCHD3Q3KNS1 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.66■□□□□ 0.74
PTCHD3Q3KNS1 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 DPP3P2-201ENST00000416030 1696 ntBASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 RNA5SP413-201ENST00000516373 109 ntBASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.65■□□□□ 0.74
PTCHD3Q3KNS1 AC099778.1-201ENST00000568593 1911 ntBASIC19.64■□□□□ 0.74
PTCHD3Q3KNS1 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
PTCHD3Q3KNS1 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PTCHD3Q3KNS1 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 KRT18P68-201ENST00000392293 1000 ntBASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 AL355472.2-201ENST00000422958 438 ntBASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 CYP2T3P-201ENST00000601990 817 ntBASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 AC112907.3-201ENST00000577781 2400 ntBASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 PCDHAC2-203ENST00000615316 3011 ntBASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTCHD3Q3KNS1 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTCHD3Q3KNS1 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms