Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.52■■□□□ 1.04
VCPP55072 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VCPP55072 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.52■■□□□ 1.04
VCPP55072 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.52■■□□□ 1.04
VCPP55072 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
VCPP55072 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
VCPP55072 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
VCPP55072 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.51■■□□□ 1.03
VCPP55072 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VCPP55072 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VCPP55072 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
VCPP55072 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VCPP55072 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.51■■□□□ 1.03
VCPP55072 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.51■■□□□ 1.03
VCPP55072 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
VCPP55072 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VCPP55072 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
VCPP55072 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
VCPP55072 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VCPP55072 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VCPP55072 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
VCPP55072 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.51■■□□□ 1.03
VCPP55072 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VCPP55072 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.5■■□□□ 1.03
VCPP55072 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VCPP55072 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VCPP55072 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
VCPP55072 KRT17P3-201ENST00000420566 1262 ntBASIC21.5■■□□□ 1.03
VCPP55072 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.5■■□□□ 1.03
VCPP55072 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.5■■□□□ 1.03
VCPP55072 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
VCPP55072 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.5■■□□□ 1.03
VCPP55072 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
VCPP55072 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VCPP55072 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
VCPP55072 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
VCPP55072 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
VCPP55072 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VCPP55072 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
VCPP55072 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VCPP55072 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
VCPP55072 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VCPP55072 KRT17P1-201ENST00000399211 1546 ntBASIC21.5■■□□□ 1.03
VCPP55072 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
VCPP55072 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VCPP55072 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.49■■□□□ 1.03
VCPP55072 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
VCPP55072 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VCPP55072 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.49■■□□□ 1.03
VCPP55072 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VCPP55072 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.49■■□□□ 1.03
VCPP55072 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
VCPP55072 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VCPP55072 AC087499.1-201ENST00000418141 1075 ntBASIC21.49■■□□□ 1.03
VCPP55072 AC091799.1-201ENST00000422823 811 ntBASIC21.49■■□□□ 1.03
VCPP55072 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.49■■□□□ 1.03
VCPP55072 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.49■■□□□ 1.03
VCPP55072 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VCPP55072 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VCPP55072 KRT18P35-201ENST00000510488 1269 ntBASIC21.49■■□□□ 1.03
VCPP55072 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
VCPP55072 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.49■■□□□ 1.03
VCPP55072 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
VCPP55072 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.49■■□□□ 1.03
VCPP55072 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.49■■□□□ 1.03
VCPP55072 HLA-B-256ENST00000639848 1089 ntBASIC21.49■■□□□ 1.03
VCPP55072 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VCPP55072 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VCPP55072 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
VCPP55072 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.48■■□□□ 1.03
VCPP55072 AP005212.1-201ENST00000581547 1997 ntBASIC21.48■■□□□ 1.03
VCPP55072 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.48■■□□□ 1.03
VCPP55072 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VCPP55072 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCPP55072 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCPP55072 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCPP55072 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCPP55072 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.48■■□□□ 1.03
VCPP55072 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VCPP55072 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.48■■□□□ 1.03
VCPP55072 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.48■■□□□ 1.03
VCPP55072 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.48■■□□□ 1.03
VCPP55072 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
VCPP55072 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCPP55072 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.48■■□□□ 1.03
VCPP55072 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
VCPP55072 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCPP55072 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCPP55072 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
VCPP55072 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
VCPP55072 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCPP55072 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VCPP55072 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VCPP55072 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
VCPP55072 AC092667.1-201ENST00000434301 2586 ntBASIC21.47■■□□□ 1.03
VCPP55072 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
VCPP55072 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VCPP55072 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VCPP55072 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VCPP55072 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms