Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH6P52701 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC28.08■■■□□ 2.09
MSH6P52701 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH6P52701 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
MSH6P52701 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
MSH6P52701 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH6P52701 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH6P52701 PRR31-201ENST00000371629 978 ntTSL 2 BASIC28.08■■■□□ 2.09
MSH6P52701 COPS8-203ENST00000409334 794 ntTSL 5 BASIC28.08■■■□□ 2.09
MSH6P52701 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC28.08■■■□□ 2.09
MSH6P52701 AC128688.1-201ENST00000487626 519 ntBASIC28.08■■■□□ 2.09
MSH6P52701 AC026271.3-201ENST00000571884 352 ntBASIC28.08■■■□□ 2.09
MSH6P52701 DGCR10-201ENST00000609839 495 ntBASIC28.08■■■□□ 2.09
MSH6P52701 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC28.08■■■□□ 2.09
MSH6P52701 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC28.08■■■□□ 2.09
MSH6P52701 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH6P52701 C9orf163-202ENST00000624034 2573 ntBASIC28.08■■■□□ 2.09
MSH6P52701 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH6P52701 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
MSH6P52701 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC28.07■■■□□ 2.08
MSH6P52701 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
MSH6P52701 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC28.07■■■□□ 2.08
MSH6P52701 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC28.07■■■□□ 2.08
MSH6P52701 EXOC3-AS1-202ENST00000623673 1663 ntBASIC28.07■■■□□ 2.08
MSH6P52701 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
MSH6P52701 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC28.07■■■□□ 2.08
MSH6P52701 FSCN1P1-201ENST00000568912 1481 ntBASIC28.07■■■□□ 2.08
MSH6P52701 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
MSH6P52701 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC28.07■■■□□ 2.08
MSH6P52701 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
MSH6P52701 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC28.07■■■□□ 2.08
MSH6P52701 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC28.07■■■□□ 2.08
MSH6P52701 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC28.07■■■□□ 2.08
MSH6P52701 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC28.06■■■□□ 2.08
MSH6P52701 ME2-208ENST00000638937 2471 ntTSL 5 BASIC28.06■■■□□ 2.08
MSH6P52701 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH6P52701 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH6P52701 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC28.06■■■□□ 2.08
MSH6P52701 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
MSH6P52701 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC28.06■■■□□ 2.08
MSH6P52701 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC28.06■■■□□ 2.08
MSH6P52701 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC28.06■■■□□ 2.08
MSH6P52701 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC28.06■■■□□ 2.08
MSH6P52701 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH6P52701 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH6P52701 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
MSH6P52701 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC28.05■■■□□ 2.08
MSH6P52701 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC28.05■■■□□ 2.08
MSH6P52701 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
MSH6P52701 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC28.04■■■□□ 2.08
MSH6P52701 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
MSH6P52701 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC28.04■■■□□ 2.08
MSH6P52701 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC28.04■■■□□ 2.08
MSH6P52701 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC28.04■■■□□ 2.08
MSH6P52701 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC28.04■■■□□ 2.08
MSH6P52701 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
MSH6P52701 IPPK-202ENST00000375522 882 ntTSL 3 BASIC28.04■■■□□ 2.08
MSH6P52701 AL450487.1-201ENST00000426799 995 ntBASIC28.04■■■□□ 2.08
MSH6P52701 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC28.04■■■□□ 2.08
MSH6P52701 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC28.04■■■□□ 2.08
MSH6P52701 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC28.04■■■□□ 2.08
MSH6P52701 AC091390.4-202ENST00000476426 537 ntBASIC28.04■■■□□ 2.08
MSH6P52701 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC28.04■■■□□ 2.08
MSH6P52701 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
MSH6P52701 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
MSH6P52701 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
MSH6P52701 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
MSH6P52701 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC28.03■■■□□ 2.08
MSH6P52701 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC28.03■■■□□ 2.08
MSH6P52701 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC28.03■■■□□ 2.08
MSH6P52701 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC28.03■■■□□ 2.08
MSH6P52701 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
MSH6P52701 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC28.03■■■□□ 2.08
MSH6P52701 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
MSH6P52701 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
MSH6P52701 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC28.03■■■□□ 2.08
MSH6P52701 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC28.02■■■□□ 2.08
MSH6P52701 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
MSH6P52701 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC28.02■■■□□ 2.08
MSH6P52701 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC28.02■■■□□ 2.08
MSH6P52701 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC28.02■■■□□ 2.08
MSH6P52701 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC28.02■■■□□ 2.08
MSH6P52701 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC28.02■■■□□ 2.08
MSH6P52701 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC28.02■■■□□ 2.08
MSH6P52701 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
MSH6P52701 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC28.02■■■□□ 2.08
MSH6P52701 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC28.02■■■□□ 2.08
MSH6P52701 AC080038.3-201ENST00000623346 1952 ntBASIC28.02■■■□□ 2.08
MSH6P52701 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC28.02■■■□□ 2.08
MSH6P52701 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC28.02■■■□□ 2.08
MSH6P52701 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.08
MSH6P52701 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC28.01■■■□□ 2.07
MSH6P52701 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC28.01■■■□□ 2.07
MSH6P52701 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC28.01■■■□□ 2.07
MSH6P52701 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC28.01■■■□□ 2.07
MSH6P52701 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC28.01■■■□□ 2.07
MSH6P52701 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
MSH6P52701 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC28.01■■■□□ 2.07
MSH6P52701 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC28.01■■■□□ 2.07
MSH6P52701 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC28.01■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms