Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SOX2P48431 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX2P48431 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SOX2P48431 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.68■□□□□ 0.42
SOX2P48431 AL358852.1-201ENST00000623174 1268 ntBASIC17.68■□□□□ 0.42
SOX2P48431 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX2P48431 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.68■□□□□ 0.42
SOX2P48431 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.68■□□□□ 0.42
SOX2P48431 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX2P48431 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX2P48431 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX2P48431 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX2P48431 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SOX2P48431 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX2P48431 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX2P48431 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX2P48431 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX2P48431 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX2P48431 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX2P48431 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX2P48431 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX2P48431 AC010141.2-201ENST00000452426 721 ntBASIC17.67■□□□□ 0.42
SOX2P48431 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX2P48431 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC17.67■□□□□ 0.42
SOX2P48431 SLC7A5P2-201ENST00000553010 536 ntBASIC17.67■□□□□ 0.42
SOX2P48431 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC17.67■□□□□ 0.42
SOX2P48431 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX2P48431 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.67■□□□□ 0.42
SOX2P48431 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.67■□□□□ 0.42
SOX2P48431 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SOX2P48431 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SOX2P48431 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SOX2P48431 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX2P48431 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX2P48431 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.66■□□□□ 0.42
SOX2P48431 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.66■□□□□ 0.42
SOX2P48431 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX2P48431 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX2P48431 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX2P48431 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SOX2P48431 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SOX2P48431 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC17.66■□□□□ 0.42
SOX2P48431 NALT1-201ENST00000429224 738 ntTSL 5 BASIC17.66■□□□□ 0.42
SOX2P48431 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC17.66■□□□□ 0.42
SOX2P48431 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX2P48431 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX2P48431 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX2P48431 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.66■□□□□ 0.42
SOX2P48431 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SOX2P48431 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SOX2P48431 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC17.65■□□□□ 0.42
SOX2P48431 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 AL020996.1-203ENST00000536896 2307 ntBASIC17.65■□□□□ 0.42
SOX2P48431 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
SOX2P48431 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
SOX2P48431 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SOX2P48431 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC17.65■□□□□ 0.42
SOX2P48431 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
SOX2P48431 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SOX2P48431 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SOX2P48431 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SOX2P48431 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SOX2P48431 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
SOX2P48431 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SOX2P48431 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SOX2P48431 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.64■□□□□ 0.42
SOX2P48431 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SOX2P48431 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SOX2P48431 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SOX2P48431 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SOX2P48431 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX2P48431 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.64■□□□□ 0.41
SOX2P48431 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SOX2P48431 AL691432.2-201ENST00000607222 2038 ntBASIC17.64■□□□□ 0.41
SOX2P48431 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SOX2P48431 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.64■□□□□ 0.41
SOX2P48431 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC17.64■□□□□ 0.41
SOX2P48431 RHOF-204ENST00000537265 699 ntTSL 2 BASIC17.64■□□□□ 0.41
SOX2P48431 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC17.64■□□□□ 0.41
SOX2P48431 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC17.64■□□□□ 0.41
SOX2P48431 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.64■□□□□ 0.41
SOX2P48431 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX2P48431 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.64■□□□□ 0.41
SOX2P48431 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX2P48431 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.64■□□□□ 0.41
SOX2P48431 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX2P48431 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms