Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TNFRSF4P43489 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TNFRSF4P43489 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
TNFRSF4P43489 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TNFRSF4P43489 AP003071.4-201ENST00000562276 1284 ntBASIC20.34■□□□□ 0.85
TNFRSF4P43489 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.34■□□□□ 0.85
TNFRSF4P43489 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.34■□□□□ 0.85
TNFRSF4P43489 AC073195.1-201ENST00000607241 877 ntBASIC20.34■□□□□ 0.85
TNFRSF4P43489 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TNFRSF4P43489 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
TNFRSF4P43489 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TNFRSF4P43489 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TNFRSF4P43489 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TNFRSF4P43489 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TNFRSF4P43489 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TNFRSF4P43489 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TNFRSF4P43489 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.33■□□□□ 0.85
TNFRSF4P43489 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.33■□□□□ 0.85
TNFRSF4P43489 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TNFRSF4P43489 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TNFRSF4P43489 EP400NL-214ENST00000641289 2402 ntBASIC20.33■□□□□ 0.85
TNFRSF4P43489 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
TNFRSF4P43489 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TNFRSF4P43489 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.33■□□□□ 0.85
TNFRSF4P43489 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
TNFRSF4P43489 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
TNFRSF4P43489 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
TNFRSF4P43489 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.33■□□□□ 0.85
TNFRSF4P43489 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.33■□□□□ 0.85
TNFRSF4P43489 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.33■□□□□ 0.85
TNFRSF4P43489 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.33■□□□□ 0.85
TNFRSF4P43489 AC133561.5-201ENST00000635547 218 ntBASIC20.33■□□□□ 0.85
TNFRSF4P43489 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
TNFRSF4P43489 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TNFRSF4P43489 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.32■□□□□ 0.84
TNFRSF4P43489 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TNFRSF4P43489 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TNFRSF4P43489 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TNFRSF4P43489 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TNFRSF4P43489 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TNFRSF4P43489 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
TNFRSF4P43489 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TNFRSF4P43489 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.32■□□□□ 0.84
TNFRSF4P43489 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TNFRSF4P43489 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.32■□□□□ 0.84
TNFRSF4P43489 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TNFRSF4P43489 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
TNFRSF4P43489 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TNFRSF4P43489 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
TNFRSF4P43489 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.31■□□□□ 0.84
TNFRSF4P43489 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TNFRSF4P43489 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.31■□□□□ 0.84
TNFRSF4P43489 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TNFRSF4P43489 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TNFRSF4P43489 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TNFRSF4P43489 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TNFRSF4P43489 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TNFRSF4P43489 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.31■□□□□ 0.84
TNFRSF4P43489 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TNFRSF4P43489 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.31■□□□□ 0.84
TNFRSF4P43489 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.31■□□□□ 0.84
TNFRSF4P43489 AL353708.3-201ENST00000610272 989 ntBASIC20.31■□□□□ 0.84
TNFRSF4P43489 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.31■□□□□ 0.84
TNFRSF4P43489 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.31■□□□□ 0.84
TNFRSF4P43489 AC097493.4-201ENST00000641197 219 ntBASIC20.31■□□□□ 0.84
TNFRSF4P43489 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TNFRSF4P43489 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.3■□□□□ 0.84
TNFRSF4P43489 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFRSF4P43489 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.3■□□□□ 0.84
TNFRSF4P43489 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.3■□□□□ 0.84
TNFRSF4P43489 FEM1AP4-201ENST00000443167 1987 ntBASIC20.3■□□□□ 0.84
TNFRSF4P43489 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.3■□□□□ 0.84
TNFRSF4P43489 KRT8P17-201ENST00000453110 1448 ntBASIC20.3■□□□□ 0.84
TNFRSF4P43489 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.3■□□□□ 0.84
TNFRSF4P43489 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
TNFRSF4P43489 FAM197Y1-201ENST00000421178 764 ntBASIC20.3■□□□□ 0.84
TNFRSF4P43489 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFRSF4P43489 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
TNFRSF4P43489 AC012306.2-201ENST00000609350 630 ntBASIC20.3■□□□□ 0.84
TNFRSF4P43489 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFRSF4P43489 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.3■□□□□ 0.84
TNFRSF4P43489 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TNFRSF4P43489 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.3■□□□□ 0.84
TNFRSF4P43489 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFRSF4P43489 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TNFRSF4P43489 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TNFRSF4P43489 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TNFRSF4P43489 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.29■□□□□ 0.84
TNFRSF4P43489 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.29■□□□□ 0.84
TNFRSF4P43489 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.29■□□□□ 0.84
TNFRSF4P43489 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TNFRSF4P43489 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.29■□□□□ 0.84
TNFRSF4P43489 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TNFRSF4P43489 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TNFRSF4P43489 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TNFRSF4P43489 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
TNFRSF4P43489 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.28■□□□□ 0.84
TNFRSF4P43489 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TNFRSF4P43489 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.28■□□□□ 0.84
TNFRSF4P43489 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms