Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSX2P35548 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.18■□□□□ 0.66
MSX2P35548 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.18■□□□□ 0.66
MSX2P35548 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.18■□□□□ 0.66
MSX2P35548 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
MSX2P35548 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSX2P35548 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
MSX2P35548 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
MSX2P35548 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
MSX2P35548 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSX2P35548 TMEM179-206ENST00000616017 1645 ntBASIC19.18■□□□□ 0.66
MSX2P35548 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
MSX2P35548 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSX2P35548 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
MSX2P35548 DPP3P2-201ENST00000416030 1696 ntBASIC19.17■□□□□ 0.66
MSX2P35548 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.17■□□□□ 0.66
MSX2P35548 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX2P35548 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX2P35548 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSX2P35548 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
MSX2P35548 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSX2P35548 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
MSX2P35548 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX2P35548 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.17■□□□□ 0.66
MSX2P35548 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.17■□□□□ 0.66
MSX2P35548 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.17■□□□□ 0.66
MSX2P35548 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
MSX2P35548 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX2P35548 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSX2P35548 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSX2P35548 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
MSX2P35548 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.17■□□□□ 0.66
MSX2P35548 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.17■□□□□ 0.66
MSX2P35548 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSX2P35548 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.16■□□□□ 0.66
MSX2P35548 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSX2P35548 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.16■□□□□ 0.66
MSX2P35548 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
MSX2P35548 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.16■□□□□ 0.66
MSX2P35548 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSX2P35548 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MSX2P35548 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
MSX2P35548 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSX2P35548 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSX2P35548 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
MSX2P35548 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.16■□□□□ 0.66
MSX2P35548 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.16■□□□□ 0.66
MSX2P35548 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MSX2P35548 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MSX2P35548 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
MSX2P35548 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
MSX2P35548 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MSX2P35548 AC007613.1-201ENST00000572811 2597 ntBASIC19.16■□□□□ 0.66
MSX2P35548 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.16■□□□□ 0.66
MSX2P35548 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSX2P35548 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MSX2P35548 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.15■□□□□ 0.66
MSX2P35548 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MSX2P35548 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSX2P35548 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSX2P35548 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.15■□□□□ 0.66
MSX2P35548 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.15■□□□□ 0.66
MSX2P35548 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.15■□□□□ 0.66
MSX2P35548 AC131281.2-201ENST00000520478 145 ntBASIC19.15■□□□□ 0.66
MSX2P35548 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.15■□□□□ 0.66
MSX2P35548 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSX2P35548 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSX2P35548 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.15■□□□□ 0.66
MSX2P35548 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
MSX2P35548 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSX2P35548 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSX2P35548 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSX2P35548 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
MSX2P35548 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MSX2P35548 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.15■□□□□ 0.66
MSX2P35548 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MSX2P35548 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
MSX2P35548 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
MSX2P35548 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
MSX2P35548 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
MSX2P35548 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.14■□□□□ 0.66
MSX2P35548 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
MSX2P35548 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
MSX2P35548 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSX2P35548 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSX2P35548 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
MSX2P35548 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.14■□□□□ 0.65
MSX2P35548 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MSX2P35548 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MSX2P35548 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.14■□□□□ 0.65
MSX2P35548 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSX2P35548 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSX2P35548 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSX2P35548 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
MSX2P35548 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSX2P35548 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSX2P35548 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSX2P35548 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
MSX2P35548 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MSX2P35548 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms