Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.61■□□□□ 0.41
COL8A1P27658 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
COL8A1P27658 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.61■□□□□ 0.41
COL8A1P27658 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL8A1P27658 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL8A1P27658 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL8A1P27658 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
COL8A1P27658 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.6■□□□□ 0.41
COL8A1P27658 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.6■□□□□ 0.41
COL8A1P27658 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.6■□□□□ 0.41
COL8A1P27658 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.6■□□□□ 0.41
COL8A1P27658 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.6■□□□□ 0.41
COL8A1P27658 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
COL8A1P27658 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.6■□□□□ 0.41
COL8A1P27658 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
COL8A1P27658 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC17.6■□□□□ 0.41
COL8A1P27658 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.6■□□□□ 0.41
COL8A1P27658 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.6■□□□□ 0.41
COL8A1P27658 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
COL8A1P27658 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL8A1P27658 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.59■□□□□ 0.41
COL8A1P27658 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.59■□□□□ 0.41
COL8A1P27658 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.59■□□□□ 0.41
COL8A1P27658 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
COL8A1P27658 AL450487.1-201ENST00000426799 995 ntBASIC17.59■□□□□ 0.41
COL8A1P27658 AC009947.2-201ENST00000444014 672 ntBASIC17.59■□□□□ 0.41
COL8A1P27658 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.59■□□□□ 0.41
COL8A1P27658 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.59■□□□□ 0.41
COL8A1P27658 AC116562.2-201ENST00000507042 360 ntBASIC17.59■□□□□ 0.41
COL8A1P27658 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.59■□□□□ 0.41
COL8A1P27658 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.59■□□□□ 0.41
COL8A1P27658 AC093458.2-201ENST00000623150 629 ntBASIC17.59■□□□□ 0.41
COL8A1P27658 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
COL8A1P27658 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL8A1P27658 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.59■□□□□ 0.41
COL8A1P27658 AC010542.4-201ENST00000563151 1910 ntBASIC17.59■□□□□ 0.41
COL8A1P27658 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
COL8A1P27658 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL8A1P27658 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL8A1P27658 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL8A1P27658 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL8A1P27658 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL8A1P27658 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.58■□□□□ 0.4
COL8A1P27658 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL8A1P27658 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL8A1P27658 AL031133.1-201ENST00000406807 723 ntBASIC17.58■□□□□ 0.4
COL8A1P27658 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.58■□□□□ 0.4
COL8A1P27658 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL8A1P27658 AC063952.2-201ENST00000498792 1227 ntBASIC17.58■□□□□ 0.4
COL8A1P27658 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.58■□□□□ 0.4
COL8A1P27658 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.58■□□□□ 0.4
COL8A1P27658 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.58■□□□□ 0.4
COL8A1P27658 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
COL8A1P27658 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL8A1P27658 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC17.58■□□□□ 0.4
COL8A1P27658 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
COL8A1P27658 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17.58■□□□□ 0.4
COL8A1P27658 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
COL8A1P27658 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC17.57■□□□□ 0.4
COL8A1P27658 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC17.57■□□□□ 0.4
COL8A1P27658 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL8A1P27658 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL8A1P27658 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC17.57■□□□□ 0.4
COL8A1P27658 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
COL8A1P27658 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL8A1P27658 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
COL8A1P27658 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL8A1P27658 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms