Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.9■■□□□ 1.1
RFX1P22670 AC087633.2-202ENST00000565166 1439 ntBASIC21.89■■□□□ 1.1
RFX1P22670 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.89■■□□□ 1.1
RFX1P22670 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
RFX1P22670 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
RFX1P22670 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
RFX1P22670 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
RFX1P22670 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
RFX1P22670 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFX1P22670 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFX1P22670 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.89■■□□□ 1.09
RFX1P22670 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.89■■□□□ 1.09
RFX1P22670 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.89■■□□□ 1.09
RFX1P22670 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
RFX1P22670 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.89■■□□□ 1.09
RFX1P22670 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.89■■□□□ 1.09
RFX1P22670 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFX1P22670 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
RFX1P22670 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFX1P22670 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFX1P22670 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
RFX1P22670 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.89■■□□□ 1.09
RFX1P22670 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFX1P22670 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFX1P22670 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.89■■□□□ 1.09
RFX1P22670 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFX1P22670 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.88■■□□□ 1.09
RFX1P22670 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
RFX1P22670 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.88■■□□□ 1.09
RFX1P22670 UNC93B4-201ENST00000505679 747 ntBASIC21.88■■□□□ 1.09
RFX1P22670 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.88■■□□□ 1.09
RFX1P22670 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.88■■□□□ 1.09
RFX1P22670 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
RFX1P22670 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.88■■□□□ 1.09
RFX1P22670 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 SLC25A24-204ENST00000569674 2357 ntBASIC21.88■■□□□ 1.09
RFX1P22670 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RFX1P22670 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.87■■□□□ 1.09
RFX1P22670 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.87■■□□□ 1.09
RFX1P22670 AC093787.1-201ENST00000450396 207 ntBASIC21.87■■□□□ 1.09
RFX1P22670 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.87■■□□□ 1.09
RFX1P22670 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.87■■□□□ 1.09
RFX1P22670 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFX1P22670 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.87■■□□□ 1.09
RFX1P22670 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.87■■□□□ 1.09
RFX1P22670 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.87■■□□□ 1.09
RFX1P22670 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.87■■□□□ 1.09
RFX1P22670 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
RFX1P22670 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFX1P22670 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
RFX1P22670 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFX1P22670 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.86■■□□□ 1.09
RFX1P22670 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFX1P22670 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.86■■□□□ 1.09
RFX1P22670 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.86■■□□□ 1.09
RFX1P22670 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFX1P22670 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.86■■□□□ 1.09
RFX1P22670 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.86■■□□□ 1.09
RFX1P22670 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.86■■□□□ 1.09
RFX1P22670 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.86■■□□□ 1.09
RFX1P22670 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.86■■□□□ 1.09
RFX1P22670 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RFX1P22670 AC099778.1-201ENST00000568593 1911 ntBASIC21.86■■□□□ 1.09
RFX1P22670 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFX1P22670 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.86■■□□□ 1.09
RFX1P22670 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RFX1P22670 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFX1P22670 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.85■■□□□ 1.09
RFX1P22670 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFX1P22670 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.85■■□□□ 1.09
RFX1P22670 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.85■■□□□ 1.09
RFX1P22670 AL596275.1-201ENST00000423464 877 ntBASIC21.85■■□□□ 1.09
RFX1P22670 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.85■■□□□ 1.09
RFX1P22670 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.85■■□□□ 1.09
RFX1P22670 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFX1P22670 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFX1P22670 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RFX1P22670 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.85■■□□□ 1.09
RFX1P22670 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.85■■□□□ 1.09
RFX1P22670 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFX1P22670 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.85■■□□□ 1.09
RFX1P22670 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFX1P22670 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RFX1P22670 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
RFX1P22670 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RFX1P22670 CYP21A1P-202ENST00000354927 1481 ntBASIC21.84■■□□□ 1.09
RFX1P22670 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms