Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.82■□□□□ 0.92
COL9A1P20849 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL9A1P20849 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.82■□□□□ 0.92
COL9A1P20849 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
COL9A1P20849 AC117947.1-201ENST00000427448 529 ntBASIC20.82■□□□□ 0.92
COL9A1P20849 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.82■□□□□ 0.92
COL9A1P20849 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL9A1P20849 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.82■□□□□ 0.92
COL9A1P20849 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.82■□□□□ 0.92
COL9A1P20849 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.82■□□□□ 0.92
COL9A1P20849 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.82■□□□□ 0.92
COL9A1P20849 AL121956.5-201ENST00000625261 221 ntBASIC20.82■□□□□ 0.92
COL9A1P20849 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL9A1P20849 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.82■□□□□ 0.92
COL9A1P20849 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.82■□□□□ 0.92
COL9A1P20849 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL9A1P20849 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
COL9A1P20849 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL9A1P20849 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.81■□□□□ 0.92
COL9A1P20849 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.81■□□□□ 0.92
COL9A1P20849 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL9A1P20849 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.81■□□□□ 0.92
COL9A1P20849 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL9A1P20849 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL9A1P20849 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.81■□□□□ 0.92
COL9A1P20849 FAM207BP-201ENST00000447172 505 ntBASIC20.81■□□□□ 0.92
COL9A1P20849 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.81■□□□□ 0.92
COL9A1P20849 AC091390.4-202ENST00000476426 537 ntBASIC20.81■□□□□ 0.92
COL9A1P20849 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.81■□□□□ 0.92
COL9A1P20849 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.81■□□□□ 0.92
COL9A1P20849 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL9A1P20849 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL9A1P20849 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL9A1P20849 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
COL9A1P20849 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL9A1P20849 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.8■□□□□ 0.92
COL9A1P20849 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL9A1P20849 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL9A1P20849 AC116050.2-201ENST00000612102 1779 ntBASIC20.8■□□□□ 0.92
COL9A1P20849 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
COL9A1P20849 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.8■□□□□ 0.92
COL9A1P20849 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.8■□□□□ 0.92
COL9A1P20849 PGM5P4-201ENST00000421970 445 ntBASIC20.8■□□□□ 0.92
COL9A1P20849 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.8■□□□□ 0.92
COL9A1P20849 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.8■□□□□ 0.92
COL9A1P20849 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.8■□□□□ 0.92
COL9A1P20849 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL9A1P20849 AC242852.2-201ENST00000615738 1807 ntBASIC20.8■□□□□ 0.92
COL9A1P20849 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL9A1P20849 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL9A1P20849 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL9A1P20849 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.8■□□□□ 0.92
COL9A1P20849 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
COL9A1P20849 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL9A1P20849 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL9A1P20849 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL9A1P20849 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL9A1P20849 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL9A1P20849 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.79■□□□□ 0.92
COL9A1P20849 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.79■□□□□ 0.92
COL9A1P20849 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL9A1P20849 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL9A1P20849 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.79■□□□□ 0.92
COL9A1P20849 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.79■□□□□ 0.92
COL9A1P20849 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.79■□□□□ 0.92
COL9A1P20849 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL9A1P20849 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL9A1P20849 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL9A1P20849 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
COL9A1P20849 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL9A1P20849 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.79■□□□□ 0.92
COL9A1P20849 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL9A1P20849 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL9A1P20849 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.79■□□□□ 0.92
COL9A1P20849 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.78■□□□□ 0.92
COL9A1P20849 KRT8P45-201ENST00000414328 1447 ntBASIC20.78■□□□□ 0.92
COL9A1P20849 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL9A1P20849 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
COL9A1P20849 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL9A1P20849 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
COL9A1P20849 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL9A1P20849 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.78■□□□□ 0.92
COL9A1P20849 KRT17P6-201ENST00000453795 1220 ntBASIC20.78■□□□□ 0.92
COL9A1P20849 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.78■□□□□ 0.92
COL9A1P20849 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC20.78■□□□□ 0.92
COL9A1P20849 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.78■□□□□ 0.92
COL9A1P20849 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC20.78■□□□□ 0.92
COL9A1P20849 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.78■□□□□ 0.92
COL9A1P20849 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.78■□□□□ 0.92
COL9A1P20849 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
COL9A1P20849 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL9A1P20849 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL9A1P20849 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL9A1P20849 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL9A1P20849 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL9A1P20849 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL9A1P20849 RNF152P1-201ENST00000397754 604 ntBASIC20.77■□□□□ 0.92
COL9A1P20849 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL9A1P20849 AL845331.1-201ENST00000424978 1190 ntBASIC20.77■□□□□ 0.92
COL9A1P20849 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms