Protein–RNA interactions for Protein: P12035

KRT3, Keratin, type II cytoskeletal 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT3P12035 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT3P12035 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
KRT3P12035 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
KRT3P12035 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.21■□□□□ 0.99
KRT3P12035 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
KRT3P12035 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT3P12035 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.21■□□□□ 0.99
KRT3P12035 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT3P12035 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT3P12035 AF201337.1-201ENST00000520239 748 ntBASIC21.21■□□□□ 0.99
KRT3P12035 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
KRT3P12035 AC105036.2-201ENST00000569468 176 ntBASIC21.21■□□□□ 0.99
KRT3P12035 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.21■□□□□ 0.99
KRT3P12035 AL589743.5-201ENST00000616611 1050 ntBASIC21.21■□□□□ 0.99
KRT3P12035 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT3P12035 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
KRT3P12035 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
KRT3P12035 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT3P12035 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.2■□□□□ 0.98
KRT3P12035 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.2■□□□□ 0.98
KRT3P12035 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
KRT3P12035 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
KRT3P12035 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.2■□□□□ 0.98
KRT3P12035 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
KRT3P12035 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT3P12035 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT3P12035 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.2■□□□□ 0.98
KRT3P12035 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.2■□□□□ 0.98
KRT3P12035 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.2■□□□□ 0.98
KRT3P12035 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
KRT3P12035 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT3P12035 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT3P12035 PCDHAC2-203ENST00000615316 3011 ntBASIC21.2■□□□□ 0.98
KRT3P12035 KRT17P1-201ENST00000399211 1546 ntBASIC21.19■□□□□ 0.98
KRT3P12035 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
KRT3P12035 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT3P12035 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT3P12035 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
KRT3P12035 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT3P12035 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT3P12035 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT3P12035 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
KRT3P12035 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT3P12035 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.19■□□□□ 0.98
KRT3P12035 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.19■□□□□ 0.98
KRT3P12035 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT3P12035 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.19■□□□□ 0.98
KRT3P12035 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.19■□□□□ 0.98
KRT3P12035 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.19■□□□□ 0.98
KRT3P12035 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT3P12035 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT3P12035 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
KRT3P12035 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.19■□□□□ 0.98
KRT3P12035 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.19■□□□□ 0.98
KRT3P12035 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT3P12035 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT3P12035 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.19■□□□□ 0.98
KRT3P12035 MKRN4P-201ENST00000444706 1521 ntBASIC21.19■□□□□ 0.98
KRT3P12035 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
KRT3P12035 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.18■□□□□ 0.98
KRT3P12035 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT3P12035 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
KRT3P12035 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT3P12035 AC006970.2-201ENST00000450065 779 ntBASIC21.18■□□□□ 0.98
KRT3P12035 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.18■□□□□ 0.98
KRT3P12035 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.18■□□□□ 0.98
KRT3P12035 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.18■□□□□ 0.98
KRT3P12035 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.18■□□□□ 0.98
KRT3P12035 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.18■□□□□ 0.98
KRT3P12035 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
KRT3P12035 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
KRT3P12035 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.18■□□□□ 0.98
KRT3P12035 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT3P12035 SLC25A24-204ENST00000569674 2357 ntBASIC21.18■□□□□ 0.98
KRT3P12035 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.18■□□□□ 0.98
KRT3P12035 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
KRT3P12035 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.18■□□□□ 0.98
KRT3P12035 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
KRT3P12035 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.18■□□□□ 0.98
KRT3P12035 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
KRT3P12035 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
KRT3P12035 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT3P12035 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
KRT3P12035 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
KRT3P12035 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT3P12035 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
KRT3P12035 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.17■□□□□ 0.98
KRT3P12035 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
KRT3P12035 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT3P12035 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.17■□□□□ 0.98
KRT3P12035 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT3P12035 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT3P12035 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
KRT3P12035 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT3P12035 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
KRT3P12035 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
KRT3P12035 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
KRT3P12035 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
KRT3P12035 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.16■□□□□ 0.98
KRT3P12035 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms