Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 TRIR-205ENST00000592273 783 ntTSL 3 BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 AC010997.5-201ENST00000609182 354 ntBASIC15.13■□□□□ 0.01
HLA-DQA1P01909 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 AL049812.1-201ENST00000432563 2267 ntBASIC15.13■□□□□ 0.01
HLA-DQA1P01909 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HLA-DQA1P01909 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC15.12■□□□□ 0.01
HLA-DQA1P01909 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 KRT16P3-201ENST00000439127 1283 ntBASIC15.12■□□□□ 0.01
HLA-DQA1P01909 OR2A1-AS1-204ENST00000470435 602 ntBASIC15.12■□□□□ 0.01
HLA-DQA1P01909 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HLA-DQA1P01909 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 LTB4R2-202ENST00000528054 3092 ntBASIC15.11■□□□□ 0.01
HLA-DQA1P01909 H19-201ENST00000411754 1788 ntTSL 5 BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 CD72-202ENST00000378430 585 ntTSL 3 BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 HES6-204ENST00000409182 863 ntTSL 2 BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 AC005332.8-201ENST00000622750 2735 ntBASIC15.11■□□□□ 0.01
HLA-DQA1P01909 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC15.11■□□□□ 0.01
HLA-DQA1P01909 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HLA-DQA1P01909 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 WAC-202ENST00000347934 2839 ntTSL 5 BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 CREM-229ENST00000474362 1030 ntTSL 2 BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 AC011484.1-201ENST00000377652 1995 ntBASIC15.1■□□□□ 0.01
HLA-DQA1P01909 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DQA1P01909 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DQA1P01909 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DQA1P01909 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DQA1P01909 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DQA1P01909 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC15.09■□□□□ 0.01
HLA-DQA1P01909 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DQA1P01909 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DQA1P01909 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
HLA-DQA1P01909 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DQA1P01909 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC15.09■□□□□ 0.01
HLA-DQA1P01909 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DQA1P01909 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms