Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.75■□□□□ 0.43
SGCEO43556 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
SGCEO43556 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.75■□□□□ 0.43
SGCEO43556 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC17.75■□□□□ 0.43
SGCEO43556 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.75■□□□□ 0.43
SGCEO43556 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC17.75■□□□□ 0.43
SGCEO43556 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SGCEO43556 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SGCEO43556 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SGCEO43556 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SGCEO43556 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
SGCEO43556 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 AC005181.1-201ENST00000604782 1256 ntBASIC17.74■□□□□ 0.43
SGCEO43556 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC17.74■□□□□ 0.43
SGCEO43556 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.74■□□□□ 0.43
SGCEO43556 AC073111.5-205ENST00000641717 521 ntBASIC17.74■□□□□ 0.43
SGCEO43556 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.74■□□□□ 0.43
SGCEO43556 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
SGCEO43556 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SGCEO43556 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SGCEO43556 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SGCEO43556 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.74■□□□□ 0.43
SGCEO43556 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SGCEO43556 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.73■□□□□ 0.43
SGCEO43556 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.73■□□□□ 0.43
SGCEO43556 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SGCEO43556 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SGCEO43556 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SGCEO43556 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SGCEO43556 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SGCEO43556 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SGCEO43556 AL512408.1-201ENST00000569378 2000 ntBASIC17.73■□□□□ 0.43
SGCEO43556 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.73■□□□□ 0.43
SGCEO43556 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SGCEO43556 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC17.73■□□□□ 0.43
SGCEO43556 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC17.73■□□□□ 0.43
SGCEO43556 OR10C1-204ENST00000622521 1039 ntBASIC17.73■□□□□ 0.43
SGCEO43556 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.73■□□□□ 0.43
SGCEO43556 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
SGCEO43556 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.73■□□□□ 0.43
SGCEO43556 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SGCEO43556 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SGCEO43556 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.73■□□□□ 0.43
SGCEO43556 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SGCEO43556 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SGCEO43556 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SGCEO43556 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.72■□□□□ 0.43
SGCEO43556 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SGCEO43556 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.72■□□□□ 0.43
SGCEO43556 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.72■□□□□ 0.43
SGCEO43556 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.72■□□□□ 0.43
SGCEO43556 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SGCEO43556 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.72■□□□□ 0.43
SGCEO43556 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.72■□□□□ 0.43
SGCEO43556 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC17.72■□□□□ 0.43
SGCEO43556 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.72■□□□□ 0.43
SGCEO43556 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
SGCEO43556 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
SGCEO43556 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.72■□□□□ 0.43
SGCEO43556 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SGCEO43556 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SGCEO43556 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SGCEO43556 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
SGCEO43556 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms