Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC34.76■■■■□ 3.15
CUX2O14529 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC34.75■■■■□ 3.15
CUX2O14529 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC34.75■■■■□ 3.15
CUX2O14529 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC34.75■■■■□ 3.15
CUX2O14529 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC34.75■■■■□ 3.15
CUX2O14529 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC34.75■■■■□ 3.15
CUX2O14529 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC34.75■■■■□ 3.15
CUX2O14529 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
CUX2O14529 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC34.75■■■■□ 3.15
CUX2O14529 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC34.75■■■■□ 3.15
CUX2O14529 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC34.74■■■■□ 3.15
CUX2O14529 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC34.74■■■■□ 3.15
CUX2O14529 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC34.74■■■■□ 3.15
CUX2O14529 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC34.74■■■■□ 3.15
CUX2O14529 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC34.74■■■■□ 3.15
CUX2O14529 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC34.74■■■■□ 3.15
CUX2O14529 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC34.74■■■■□ 3.15
CUX2O14529 PTK2-216ENST00000519881 863 ntTSL 3 BASIC34.74■■■■□ 3.15
CUX2O14529 SDHD-206ENST00000528182 754 ntTSL 3 BASIC34.74■■■■□ 3.15
CUX2O14529 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC34.74■■■■□ 3.15
CUX2O14529 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC34.74■■■■□ 3.15
CUX2O14529 AC130371.2-201ENST00000619443 611 ntBASIC34.74■■■■□ 3.15
CUX2O14529 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
CUX2O14529 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC34.74■■■■□ 3.15
CUX2O14529 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC34.73■■■■□ 3.15
CUX2O14529 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC34.73■■■■□ 3.15
CUX2O14529 HOMER2P1-201ENST00000455653 964 ntBASIC34.73■■■■□ 3.15
CUX2O14529 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC34.73■■■■□ 3.15
CUX2O14529 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC34.73■■■■□ 3.15
CUX2O14529 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC34.73■■■■□ 3.15
CUX2O14529 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC34.72■■■■□ 3.15
CUX2O14529 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC34.72■■■■□ 3.15
CUX2O14529 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC34.72■■■■□ 3.15
CUX2O14529 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC34.72■■■■□ 3.15
CUX2O14529 FSCN1P1-201ENST00000568912 1481 ntBASIC34.72■■■■□ 3.15
CUX2O14529 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC34.72■■■■□ 3.15
CUX2O14529 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC34.71■■■■□ 3.15
CUX2O14529 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC34.71■■■■□ 3.15
CUX2O14529 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC34.71■■■■□ 3.15
CUX2O14529 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC34.71■■■■□ 3.15
CUX2O14529 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
CUX2O14529 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
CUX2O14529 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC34.71■■■■□ 3.15
CUX2O14529 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC34.71■■■■□ 3.15
CUX2O14529 AC092053.2-201ENST00000640557 1818 ntBASIC34.71■■■■□ 3.15
CUX2O14529 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
CUX2O14529 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC34.71■■■■□ 3.15
CUX2O14529 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC34.71■■■■□ 3.15
CUX2O14529 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC34.71■■■■□ 3.15
CUX2O14529 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC34.7■■■■□ 3.15
CUX2O14529 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC34.7■■■■□ 3.15
CUX2O14529 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC34.7■■■■□ 3.15
CUX2O14529 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC34.7■■■■□ 3.15
CUX2O14529 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC34.7■■■■□ 3.15
CUX2O14529 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC34.7■■■■□ 3.15
CUX2O14529 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC34.7■■■■□ 3.15
CUX2O14529 PRR29-207ENST00000580752 458 ntTSL 3 BASIC34.7■■■■□ 3.15
CUX2O14529 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC34.7■■■■□ 3.14
CUX2O14529 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC34.69■■■■□ 3.14
CUX2O14529 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC34.69■■■■□ 3.14
CUX2O14529 ANKRD20A18P-201ENST00000359341 492 ntBASIC34.69■■■■□ 3.14
CUX2O14529 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC34.69■■■■□ 3.14
CUX2O14529 PKM-204ENST00000449901 2526 ntTSL 2 BASIC34.69■■■■□ 3.14
CUX2O14529 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC34.69■■■■□ 3.14
CUX2O14529 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC34.69■■■■□ 3.14
CUX2O14529 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC34.68■■■■□ 3.14
CUX2O14529 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
CUX2O14529 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC34.68■■■■□ 3.14
CUX2O14529 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC34.68■■■■□ 3.14
CUX2O14529 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC34.68■■■■□ 3.14
CUX2O14529 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
CUX2O14529 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
CUX2O14529 AC068473.5-201ENST00000616428 2072 ntBASIC34.68■■■■□ 3.14
CUX2O14529 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
CUX2O14529 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
CUX2O14529 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC34.68■■■■□ 3.14
CUX2O14529 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC34.67■■■■□ 3.14
CUX2O14529 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
CUX2O14529 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC34.67■■■■□ 3.14
CUX2O14529 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC34.67■■■■□ 3.14
CUX2O14529 AL031985.4-201ENST00000642138 673 ntBASIC34.67■■■■□ 3.14
CUX2O14529 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC34.67■■■■□ 3.14
CUX2O14529 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
CUX2O14529 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
CUX2O14529 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC34.67■■■■□ 3.14
CUX2O14529 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
CUX2O14529 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC34.66■■■■□ 3.14
CUX2O14529 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC34.66■■■■□ 3.14
CUX2O14529 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
CUX2O14529 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC34.66■■■■□ 3.14
CUX2O14529 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC34.66■■■■□ 3.14
CUX2O14529 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC34.66■■■■□ 3.14
CUX2O14529 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC34.66■■■■□ 3.14
CUX2O14529 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
CUX2O14529 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
CUX2O14529 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC34.65■■■■□ 3.14
CUX2O14529 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC34.65■■■■□ 3.14
CUX2O14529 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC34.65■■■■□ 3.14
CUX2O14529 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
CUX2O14529 AL359075.1-203ENST00000462729 1002 ntBASIC34.65■■■■□ 3.14
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms