Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC15.78■□□□□ 0.12
COL6A5A8TX70 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A5A8TX70 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A5A8TX70 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A5A8TX70 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
COL6A5A8TX70 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A5A8TX70 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A5A8TX70 AC142381.3-201ENST00000568208 1670 ntBASIC15.78■□□□□ 0.12
COL6A5A8TX70 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A5A8TX70 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A5A8TX70 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
COL6A5A8TX70 HMGN1P19-201ENST00000436976 333 ntBASIC15.78■□□□□ 0.12
COL6A5A8TX70 AC092183.1-201ENST00000469884 875 ntBASIC15.78■□□□□ 0.12
COL6A5A8TX70 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC15.78■□□□□ 0.12
COL6A5A8TX70 BCL10-202ENST00000620248 774 ntTSL 5 BASIC15.78■□□□□ 0.12
COL6A5A8TX70 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A5A8TX70 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A5A8TX70 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.12
COL6A5A8TX70 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A5A8TX70 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
COL6A5A8TX70 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC15.77■□□□□ 0.12
COL6A5A8TX70 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A5A8TX70 CD70-202ENST00000423145 881 ntTSL 2 BASIC15.77■□□□□ 0.12
COL6A5A8TX70 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A5A8TX70 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC15.77■□□□□ 0.12
COL6A5A8TX70 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A5A8TX70 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A5A8TX70 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC15.77■□□□□ 0.12
COL6A5A8TX70 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
COL6A5A8TX70 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A5A8TX70 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A5A8TX70 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL6A5A8TX70 GXYLT1P4-201ENST00000613576 1192 ntBASIC15.77■□□□□ 0.11
COL6A5A8TX70 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC15.77■□□□□ 0.11
COL6A5A8TX70 AC087742.1-201ENST00000575880 1738 ntBASIC15.76■□□□□ 0.11
COL6A5A8TX70 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
COL6A5A8TX70 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A5A8TX70 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC15.76■□□□□ 0.11
COL6A5A8TX70 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A5A8TX70 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC15.76■□□□□ 0.11
COL6A5A8TX70 VENTXP5-201ENST00000523979 775 ntBASIC15.76■□□□□ 0.11
COL6A5A8TX70 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.76■□□□□ 0.11
COL6A5A8TX70 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A5A8TX70 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
COL6A5A8TX70 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
COL6A5A8TX70 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A5A8TX70 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A5A8TX70 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A5A8TX70 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A5A8TX70 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.76■□□□□ 0.11
COL6A5A8TX70 AC007663.1-201ENST00000438948 1240 ntBASIC15.76■□□□□ 0.11
COL6A5A8TX70 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC15.76■□□□□ 0.11
COL6A5A8TX70 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
COL6A5A8TX70 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.76■□□□□ 0.11
COL6A5A8TX70 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
COL6A5A8TX70 AC022898.2-201ENST00000616822 1312 ntBASIC15.76■□□□□ 0.11
COL6A5A8TX70 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL6A5A8TX70 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A5A8TX70 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A5A8TX70 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC15.75■□□□□ 0.11
COL6A5A8TX70 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A5A8TX70 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC15.75■□□□□ 0.11
COL6A5A8TX70 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A5A8TX70 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC15.75■□□□□ 0.11
COL6A5A8TX70 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A5A8TX70 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC15.75■□□□□ 0.11
COL6A5A8TX70 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC15.75■□□□□ 0.11
COL6A5A8TX70 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
COL6A5A8TX70 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A5A8TX70 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A5A8TX70 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A5A8TX70 SKP2-204ENST00000508514 821 ntTSL 3 BASIC15.75■□□□□ 0.11
COL6A5A8TX70 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.75■□□□□ 0.11
COL6A5A8TX70 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC15.75■□□□□ 0.11
COL6A5A8TX70 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
COL6A5A8TX70 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC15.75■□□□□ 0.11
COL6A5A8TX70 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL6A5A8TX70 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC15.75■□□□□ 0.11
COL6A5A8TX70 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC15.75■□□□□ 0.11
COL6A5A8TX70 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL6A5A8TX70 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL6A5A8TX70 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL6A5A8TX70 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL6A5A8TX70 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL6A5A8TX70 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL6A5A8TX70 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL6A5A8TX70 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 AC010542.4-201ENST00000563151 1910 ntBASIC15.74■□□□□ 0.11
COL6A5A8TX70 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL6A5A8TX70 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC15.74■□□□□ 0.11
COL6A5A8TX70 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL6A5A8TX70 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms