Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CPSF4LA6NMK7 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 AC097381.1-201ENST00000429019 1296 ntBASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CPSF4LA6NMK7 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 AC007952.6-201ENST00000573168 2673 ntBASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 AC003957.1-201ENST00000625108 2673 ntBASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 TERF1P5-201ENST00000477545 1207 ntBASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 AC010536.3-201ENST00000620306 533 ntBASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CPSF4LA6NMK7 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CPSF4LA6NMK7 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
CPSF4LA6NMK7 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.52■□□□□ 0.55
CPSF4LA6NMK7 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.52■□□□□ 0.55
CPSF4LA6NMK7 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CPSF4LA6NMK7 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CPSF4LA6NMK7 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
CPSF4LA6NMK7 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CPSF4LA6NMK7 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CPSF4LA6NMK7 AL591742.1-201ENST00000604433 565 ntBASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms