Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC27.1■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC27.1■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC27.1■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 LINC01023-201ENST00000606054 436 ntBASIC27.1■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC27.1■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC27.09■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC27.09■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC27.09■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 AC093787.1-201ENST00000450396 207 ntBASIC27.09■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 AC243732.1-201ENST00000612648 864 ntBASIC27.09■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC27.09■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC27.08■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC27.08■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 GABARAPL3-202ENST00000624044 1851 ntBASIC27.08■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC27.08■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC27.08■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC27.08■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC27.08■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC27.08■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC27.08■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 MIR2861-201ENST00000636310 90 ntBASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC27.07■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC27.06■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC27.06■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC27.06■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 CYP2T1P-201ENST00000432607 1285 ntBASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 REXO1L12P-201ENST00000622156 912 ntBASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 AC099778.1-201ENST00000568593 1911 ntBASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC27.05■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC27.04■■□□□ 1.92
SENP3-EIF4A1A0A087X0R7 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC27.04■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms