Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RBM12B-AS1-201ENST00000623283 653 ntBASIC8.37□□□□□ -1.07
MSX1P28360 CTSLP2-202ENST00000626319 1104 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 OR8A1-204ENST00000642111 1145 ntBASIC8.37□□□□□ -1.07
MSX1P28360 C8orf44-201ENST00000390159 1817 ntAPPRIS P2 TSL 2 BASIC8.37□□□□□ -1.07
MSX1P28360 DIS3L-201ENST00000319194 3763 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 GPR182-201ENST00000300098 3451 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 MX1-203ENST00000398600 3470 ntAPPRIS P1 TSL 2 BASIC8.37□□□□□ -1.07
MSX1P28360 CHEK2-206ENST00000402731 1545 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 MTHFD2P1-203ENST00000494840 2595 ntTSL 2 BASIC8.37□□□□□ -1.07
MSX1P28360 ZNF619-210ENST00000522736 2030 ntTSL 5 BASIC8.37□□□□□ -1.07
MSX1P28360 NCLP2-201ENST00000416078 1462 ntBASIC8.37□□□□□ -1.07
MSX1P28360 ILDR2-201ENST00000271417 13140 ntAPPRIS P2 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 CNOT4-212ENST00000541284 3563 ntAPPRIS ALT1 TSL 5 BASIC8.37□□□□□ -1.07
MSX1P28360 TEX11-203ENST00000374333 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 BHLHB9-205ENST00000457056 4082 ntAPPRIS P1 TSL 4 BASIC8.37□□□□□ -1.07
MSX1P28360 ZP2-204ENST00000574091 2241 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 NTRK3-220ENST00000626019 2741 ntTSL 5 BASIC8.37□□□□□ -1.07
MSX1P28360 ABCA9-207ENST00000495634 1428 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 BRD2-203ENST00000395287 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 SLF2-203ENST00000370271 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 C1orf198-202ENST00000427697 3666 ntAPPRIS ALT2 TSL 2 BASIC8.36□□□□□ -1.07
MSX1P28360 EGFLAM-201ENST00000322350 4411 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 ZNF280A-201ENST00000302097 2148 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 VNN3-212ENST00000519686 1377 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 C17orf80-205ENST00000535032 2129 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 OIP5-AS1-201ENST00000500949 8829 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 GOSR2-240ENST00000640621 3059 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 CHRM2-202ENST00000401861 2571 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 AKR1D1-201ENST00000242375 2347 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 CLCC1-206ENST00000369970 2078 ntAPPRIS P3 TSL 5 BASIC8.36□□□□□ -1.07
MSX1P28360 AC027279.4-201ENST00000624371 2072 ntBASIC8.36□□□□□ -1.07
MSX1P28360 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC8.36□□□□□ -1.07
MSX1P28360 ATP6V1C1-201ENST00000395862 5612 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 KCTD19-201ENST00000304372 2958 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 CCR1-201ENST00000296140 2731 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 TAF9B-201ENST00000341864 2713 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 THSD4-203ENST00000357769 3403 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 NEDD4L-201ENST00000256830 2920 ntTSL 5 BASIC8.36□□□□□ -1.07
MSX1P28360 CD164-203ENST00000324953 2936 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 LIG4-202ENST00000405925 4065 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 SCGB1D2-201ENST00000244926 480 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 OR10H3-201ENST00000305892 951 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
MSX1P28360 OR56B4-201ENST00000316529 1152 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
MSX1P28360 TMCO5A-201ENST00000319669 1274 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC8.36□□□□□ -1.07
MSX1P28360 SUN5-203ENST00000375523 1153 ntAPPRIS ALT2 TSL 5 BASIC8.36□□□□□ -1.07
MSX1P28360 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC8.36□□□□□ -1.07
MSX1P28360 TRAV20-201ENST00000390448 406 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
MSX1P28360 FANCL-204ENST00000403676 849 ntTSL 3 BASIC8.36□□□□□ -1.07
MSX1P28360 SULT1C4-202ENST00000409309 1045 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 RPSAP63-201ENST00000412013 888 ntBASIC8.36□□□□□ -1.07
MSX1P28360 RANP4-201ENST00000413361 655 ntBASIC8.36□□□□□ -1.07
MSX1P28360 TATDN1P1-201ENST00000414123 891 ntBASIC8.36□□□□□ -1.07
MSX1P28360 SMIM12-201ENST00000417239 684 ntAPPRIS P1 TSL 3 BASIC8.36□□□□□ -1.07
MSX1P28360 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC8.36□□□□□ -1.07
MSX1P28360 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC8.36□□□□□ -1.07
MSX1P28360 TNPO1P1-201ENST00000423641 1138 ntBASIC8.36□□□□□ -1.07
MSX1P28360 OR52S1P-201ENST00000427016 937 ntBASIC8.36□□□□□ -1.07
MSX1P28360 TAAR9-201ENST00000434551 1047 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
MSX1P28360 AC016723.1-202ENST00000436982 643 ntTSL 5 BASIC8.36□□□□□ -1.07
MSX1P28360 FGF7P5-201ENST00000441829 291 ntBASIC8.36□□□□□ -1.07
MSX1P28360 MTCO1P19-201ENST00000443487 500 ntBASIC8.36□□□□□ -1.07
MSX1P28360 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC8.36□□□□□ -1.07
MSX1P28360 VN1R34P-201ENST00000447387 883 ntBASIC8.36□□□□□ -1.07
MSX1P28360 OR52Y1P-201ENST00000452418 828 ntBASIC8.36□□□□□ -1.07
MSX1P28360 C3orf67-AS1-201ENST00000463703 562 ntTSL 4 BASIC8.36□□□□□ -1.07
MSX1P28360 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC8.36□□□□□ -1.07
MSX1P28360 LINC00888-204ENST00000487386 421 ntBASIC8.36□□□□□ -1.07
MSX1P28360 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC8.36□□□□□ -1.07
MSX1P28360 NDUFB4P12-201ENST00000513465 390 ntBASIC8.36□□□□□ -1.07
MSX1P28360 ASPH-206ENST00000517661 809 ntTSL 2 BASIC8.36□□□□□ -1.07
MSX1P28360 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC8.36□□□□□ -1.07
MSX1P28360 ASPH-225ENST00000522835 1258 ntTSL 2 BASIC8.36□□□□□ -1.07
MSX1P28360 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 CASP1-204ENST00000525825 1237 ntAPPRIS ALT2 TSL 2 BASIC8.36□□□□□ -1.07
MSX1P28360 AP001124.1-201ENST00000529628 385 ntBASIC8.36□□□□□ -1.07
MSX1P28360 HNRNPKP3-202ENST00000533565 589 ntTSL 4 BASIC8.36□□□□□ -1.07
MSX1P28360 AL591222.1-201ENST00000568063 3844 ntBASIC8.36□□□□□ -1.07
MSX1P28360 RBM22P1-201ENST00000578589 1214 ntBASIC8.36□□□□□ -1.07
MSX1P28360 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC8.36□□□□□ -1.07
MSX1P28360 ZNF98-205ENST00000601553 566 ntTSL 3 BASIC8.36□□□□□ -1.07
MSX1P28360 SRGAP2D-201ENST00000605551 1021 ntBASIC8.36□□□□□ -1.07
MSX1P28360 AC016877.3-201ENST00000606778 504 ntBASIC8.36□□□□□ -1.07
MSX1P28360 AC126118.1-201ENST00000607744 628 ntBASIC8.36□□□□□ -1.07
MSX1P28360 AC012676.3-201ENST00000614983 479 ntBASIC8.36□□□□□ -1.07
MSX1P28360 AC016769.4-201ENST00000616893 535 ntBASIC8.36□□□□□ -1.07
MSX1P28360 CSTL1-205ENST00000619238 477 ntTSL 5 BASIC8.36□□□□□ -1.07
MSX1P28360 SMCR2_1.1-201ENST00000621493 157 ntBASIC8.36□□□□□ -1.07
MSX1P28360 AC009878.1-201ENST00000621819 340 ntBASIC8.36□□□□□ -1.07
MSX1P28360 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC8.36□□□□□ -1.07
MSX1P28360 AC095031.1-201ENST00000623685 672 ntBASIC8.36□□□□□ -1.07
MSX1P28360 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC8.36□□□□□ -1.07
MSX1P28360 NELFE-214ENST00000625905 111 ntTSL 5 BASIC8.36□□□□□ -1.07
MSX1P28360 MIR3150A-201ENST00000636546 80 ntBASIC8.36□□□□□ -1.07
MSX1P28360 OR10H3-202ENST00000641646 1029 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
MSX1P28360 LY9-201ENST00000263285 2443 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 KNG1-202ENST00000287611 1720 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 RNASEH2B-AS1-209ENST00000631080 1707 ntTSL 5 BASIC8.36□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms