Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC003965.1-201ENST00000575693 667 ntTSL 3 BASIC8.39□□□□□ -1.07
MSX1P28360 MIR3915-201ENST00000578518 97 ntBASIC8.39□□□□□ -1.07
MSX1P28360 AC008569.2-201ENST00000589702 889 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 AC010320.3-201ENST00000594865 447 ntTSL 3 BASIC8.39□□□□□ -1.07
MSX1P28360 AC025518.2-201ENST00000605229 492 ntBASIC8.39□□□□□ -1.07
MSX1P28360 AP003117.2-201ENST00000606010 545 ntBASIC8.39□□□□□ -1.07
MSX1P28360 AP003392.5-201ENST00000607857 415 ntBASIC8.39□□□□□ -1.07
MSX1P28360 AL589743.4-201ENST00000610763 586 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 AL138478.1-201ENST00000612252 832 ntBASIC8.39□□□□□ -1.07
MSX1P28360 MIR6083-201ENST00000612737 106 ntBASIC8.39□□□□□ -1.07
MSX1P28360 SYN3-213ENST00000619146 561 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 SMIM11B-203ENST00000622934 1193 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 CCDC163-207ENST00000629482 953 ntAPPRIS P5 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 FP325313.1-201ENST00000638228 703 ntBASIC8.39□□□□□ -1.07
MSX1P28360 PDZPH1P-201ENST00000412514 1783 ntBASIC8.39□□□□□ -1.07
MSX1P28360 PXYLP1-204ENST00000504264 1773 ntTSL 2 BASIC8.39□□□□□ -1.07
MSX1P28360 DCTN4-203ENST00000447998 4208 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 UTRN-203ENST00000367526 3220 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 U91328.2-201ENST00000606723 4130 ntTSL 2 BASIC8.39□□□□□ -1.07
MSX1P28360 TMTC4-202ENST00000342624 3602 ntTSL 2 BASIC8.39□□□□□ -1.07
MSX1P28360 VSIG4-204ENST00000455586 2190 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 NEMP1-202ENST00000379391 5370 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 AC240565.2-201ENST00000623180 2096 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 AEBP2-202ENST00000360995 2533 ntAPPRIS ALT2 TSL 2 BASIC8.39□□□□□ -1.07
MSX1P28360 SEMA4D-207ENST00000420987 4275 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 OGFOD1P1-201ENST00000447552 1592 ntBASIC8.39□□□□□ -1.07
MSX1P28360 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 KDELC1P1-201ENST00000512118 1509 ntBASIC8.39□□□□□ -1.07
MSX1P28360 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC8.39□□□□□ -1.07
MSX1P28360 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 L3MBTL3-203ENST00000368139 4148 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 ADD3-203ENST00000360162 3114 ntAPPRIS ALT1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 AC003958.2-202ENST00000432258 3890 ntTSL 2 BASIC8.38□□□□□ -1.07
MSX1P28360 CLRN1-201ENST00000295911 1444 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 KCNK2-202ENST00000391895 1410 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 MORN3-201ENST00000355329 3803 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 ZNF146-202ENST00000456324 3780 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.07
MSX1P28360 GTF2IP1-205ENST00000618412 2990 ntTSL 2 BASIC8.38□□□□□ -1.07
MSX1P28360 C2orf42-201ENST00000264434 2581 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 AC239859.1-201ENST00000449715 2594 ntBASIC8.38□□□□□ -1.07
MSX1P28360 ABCC2-201ENST00000370434 1714 ntTSL 2 BASIC8.38□□□□□ -1.07
MSX1P28360 AC016909.2-201ENST00000424510 1711 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 CR381670.1-201ENST00000624291 1693 ntBASIC8.38□□□□□ -1.07
MSX1P28360 CALCOCO1-210ENST00000548263 3888 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 TRIM66-201ENST00000299550 9753 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
MSX1P28360 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 CRYGA-201ENST00000304502 609 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 OR7G3-201ENST00000305444 939 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
MSX1P28360 OR51G2-201ENST00000322013 1023 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
MSX1P28360 MSR1-203ENST00000355282 1167 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 Y_RNA.248-201ENST00000364501 109 ntBASIC8.38□□□□□ -1.07
MSX1P28360 C4BPB-203ENST00000367078 978 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 IGLV3-25-201ENST00000390305 380 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
MSX1P28360 AL035467.1-201ENST00000403583 686 ntBASIC8.38□□□□□ -1.07
MSX1P28360 Z86062.1-201ENST00000406773 777 ntBASIC8.38□□□□□ -1.07
MSX1P28360 USP9YP33-201ENST00000412220 421 ntBASIC8.38□□□□□ -1.07
MSX1P28360 AL441943.3-201ENST00000418524 587 ntTSL 5 BASIC8.38□□□□□ -1.07
MSX1P28360 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC8.38□□□□□ -1.07
MSX1P28360 AK4P4-201ENST00000419465 646 ntBASIC8.38□□□□□ -1.07
MSX1P28360 IYD-207ENST00000425615 684 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 NPM1P26-201ENST00000426339 738 ntBASIC8.38□□□□□ -1.07
MSX1P28360 AC119428.1-201ENST00000429099 383 ntTSL 3 BASIC8.38□□□□□ -1.07
MSX1P28360 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 USP9YP22-201ENST00000438971 294 ntBASIC8.38□□□□□ -1.07
MSX1P28360 AC068135.1-201ENST00000446164 246 ntBASIC8.38□□□□□ -1.07
MSX1P28360 AC019186.1-201ENST00000447019 545 ntTSL 3 BASIC8.38□□□□□ -1.07
MSX1P28360 LINC01364-201ENST00000452509 889 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 RBMX2P1-201ENST00000454795 836 ntBASIC8.38□□□□□ -1.07
MSX1P28360 AC008410.1-201ENST00000483777 339 ntBASIC8.38□□□□□ -1.07
MSX1P28360 EGFLAM-207ENST00000506135 889 ntTSL 3 BASIC8.38□□□□□ -1.07
MSX1P28360 TUBB4BP5-201ENST00000512282 427 ntBASIC8.38□□□□□ -1.07
MSX1P28360 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC8.38□□□□□ -1.07
MSX1P28360 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC8.38□□□□□ -1.07
MSX1P28360 LINC00958-203ENST00000527945 1121 ntTSL 2 BASIC8.38□□□□□ -1.07
MSX1P28360 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC8.38□□□□□ -1.07
MSX1P28360 AC087521.2-203ENST00000530450 593 ntTSL 4 BASIC8.38□□□□□ -1.07
MSX1P28360 AC117503.2-201ENST00000538837 321 ntTSL 3 BASIC8.38□□□□□ -1.07
MSX1P28360 AC026369.3-201ENST00000540226 586 ntTSL 2 BASIC8.38□□□□□ -1.07
MSX1P28360 AC087883.1-201ENST00000551882 391 ntBASIC8.38□□□□□ -1.07
MSX1P28360 AC106028.1-201ENST00000554322 526 ntBASIC8.38□□□□□ -1.07
MSX1P28360 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC8.38□□□□□ -1.07
MSX1P28360 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC8.38□□□□□ -1.07
MSX1P28360 AC118658.1-201ENST00000560221 334 ntTSL 5 BASIC8.38□□□□□ -1.07
MSX1P28360 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC8.38□□□□□ -1.07
MSX1P28360 ULK4P3-202ENST00000565158 593 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 AC024270.3-201ENST00000565513 396 ntTSL 3 BASIC8.38□□□□□ -1.07
MSX1P28360 ZNF213-AS1-208ENST00000575139 530 ntTSL 4 BASIC8.38□□□□□ -1.07
MSX1P28360 RN7SL381P-201ENST00000577658 298 ntBASIC8.38□□□□□ -1.07
MSX1P28360 SLC25A36P1-201ENST00000590111 465 ntBASIC8.38□□□□□ -1.07
MSX1P28360 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC8.38□□□□□ -1.07
MSX1P28360 DYNLL1P3-201ENST00000596113 266 ntBASIC8.38□□□□□ -1.07
MSX1P28360 ARMCX7P-202ENST00000602449 655 ntBASIC8.38□□□□□ -1.07
MSX1P28360 TRMT112P7-201ENST00000603133 367 ntBASIC8.38□□□□□ -1.07
MSX1P28360 AC011894.1-201ENST00000603255 456 ntBASIC8.38□□□□□ -1.07
MSX1P28360 AL122127.1-201ENST00000603832 327 ntBASIC8.38□□□□□ -1.07
MSX1P28360 AC106791.2-201ENST00000604680 391 ntBASIC8.38□□□□□ -1.07
MSX1P28360 AL592221.1-201ENST00000605266 382 ntBASIC8.38□□□□□ -1.07
MSX1P28360 AC083862.2-201ENST00000608819 1145 ntBASIC8.38□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms