Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHGA1Q9Y5H4 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHGA1Q9Y5H4 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
PCDHGA1Q9Y5H4 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHGA1Q9Y5H4 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHGA1Q9Y5H4 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHGA1Q9Y5H4 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHGA1Q9Y5H4 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHGA1Q9Y5H4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHGA1Q9Y5H4 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHGA1Q9Y5H4 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHGA1Q9Y5H4 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHGA1Q9Y5H4 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHGA1Q9Y5H4 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 AC113347.1-201ENST00000413321 391 ntBASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDHGA1Q9Y5H4 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 AC005521.1-201ENST00000393351 872 ntBASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 AP002982.1-201ENST00000492365 877 ntBASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 AL031963.3-201ENST00000606441 850 ntBASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 REXO1L10P-201ENST00000615707 1290 ntBASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 AC079598.2-202ENST00000546624 1451 ntBASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHGA1Q9Y5H4 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 C1orf229-201ENST00000623686 2258 ntBASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDHGA1Q9Y5H4 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.39■□□□□ 0.7
PCDHGA1Q9Y5H4 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 LINC01568-207ENST00000641790 1380 ntBASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHGA1Q9Y5H4 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms