Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS9D1Q9Y2B5 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS9D1Q9Y2B5 CYP2T3P-201ENST00000601990 817 ntBASIC20.05■□□□□ 0.8
VPS9D1Q9Y2B5 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS9D1Q9Y2B5 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS9D1Q9Y2B5 AC099778.1-201ENST00000568593 1911 ntBASIC20.05■□□□□ 0.8
VPS9D1Q9Y2B5 SMG8-203ENST00000578922 2178 ntBASIC20.05■□□□□ 0.8
VPS9D1Q9Y2B5 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
VPS9D1Q9Y2B5 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS9D1Q9Y2B5 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS9D1Q9Y2B5 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
VPS9D1Q9Y2B5 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.05■□□□□ 0.8
VPS9D1Q9Y2B5 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS9D1Q9Y2B5 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
VPS9D1Q9Y2B5 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 AC080038.1-201ENST00000611274 1154 ntBASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 AL589743.5-201ENST00000616611 1050 ntBASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS9D1Q9Y2B5 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS9D1Q9Y2B5 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS9D1Q9Y2B5 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
VPS9D1Q9Y2B5 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.02■□□□□ 0.8
VPS9D1Q9Y2B5 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.02■□□□□ 0.8
VPS9D1Q9Y2B5 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS9D1Q9Y2B5 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.02■□□□□ 0.8
VPS9D1Q9Y2B5 AC133552.2-202ENST00000575694 574 ntBASIC20.02■□□□□ 0.8
VPS9D1Q9Y2B5 AC092437.1-201ENST00000624794 1048 ntBASIC20.02■□□□□ 0.8
VPS9D1Q9Y2B5 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.02■□□□□ 0.8
VPS9D1Q9Y2B5 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
VPS9D1Q9Y2B5 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS9D1Q9Y2B5 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS9D1Q9Y2B5 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
VPS9D1Q9Y2B5 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
VPS9D1Q9Y2B5 AC010980.2-201ENST00000587099 1412 ntBASIC20.02■□□□□ 0.79
VPS9D1Q9Y2B5 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS9D1Q9Y2B5 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20■□□□□ 0.79
VPS9D1Q9Y2B5 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms