Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.36■■□□□ 1.01
CDH9Q9ULB4 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.36■■□□□ 1.01
CDH9Q9ULB4 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDH9Q9ULB4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
CDH9Q9ULB4 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.36■■□□□ 1.01
CDH9Q9ULB4 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.36■■□□□ 1.01
CDH9Q9ULB4 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDH9Q9ULB4 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDH9Q9ULB4 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.36■■□□□ 1.01
CDH9Q9ULB4 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.36■■□□□ 1.01
CDH9Q9ULB4 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.36■■□□□ 1.01
CDH9Q9ULB4 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.36■■□□□ 1.01
CDH9Q9ULB4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDH9Q9ULB4 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.35■■□□□ 1.01
CDH9Q9ULB4 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH9Q9ULB4 PKD1P6-201ENST00000343738 4769 ntBASIC21.35■■□□□ 1.01
CDH9Q9ULB4 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH9Q9ULB4 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH9Q9ULB4 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH9Q9ULB4 HLA-G-202ENST00000376815 851 ntBASIC21.35■■□□□ 1.01
CDH9Q9ULB4 HLA-G-203ENST00000376818 1127 ntBASIC21.35■■□□□ 1.01
CDH9Q9ULB4 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.35■■□□□ 1.01
CDH9Q9ULB4 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDH9Q9ULB4 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.35■■□□□ 1.01
CDH9Q9ULB4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CDH9Q9ULB4 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.35■■□□□ 1.01
CDH9Q9ULB4 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.35■■□□□ 1.01
CDH9Q9ULB4 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDH9Q9ULB4 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 AL031963.3-201ENST00000606441 850 ntBASIC21.34■■□□□ 1.01
CDH9Q9ULB4 AC069544.1-201ENST00000609399 999 ntBASIC21.34■■□□□ 1.01
CDH9Q9ULB4 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDH9Q9ULB4 DPP3P2-201ENST00000416030 1696 ntBASIC21.34■■□□□ 1.01
CDH9Q9ULB4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDH9Q9ULB4 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CDH9Q9ULB4 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDH9Q9ULB4 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.33■■□□□ 1.01
CDH9Q9ULB4 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CDH9Q9ULB4 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CDH9Q9ULB4 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CDH9Q9ULB4 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDH9Q9ULB4 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDH9Q9ULB4 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.33■■□□□ 1.01
CDH9Q9ULB4 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.33■■□□□ 1.01
CDH9Q9ULB4 KRT8P20-201ENST00000423953 1409 ntBASIC21.33■■□□□ 1.01
CDH9Q9ULB4 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDH9Q9ULB4 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDH9Q9ULB4 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CDH9Q9ULB4 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
CDH9Q9ULB4 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.33■■□□□ 1
CDH9Q9ULB4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.32■■□□□ 1
CDH9Q9ULB4 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.32■■□□□ 1
CDH9Q9ULB4 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.32■■□□□ 1
CDH9Q9ULB4 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CDH9Q9ULB4 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
CDH9Q9ULB4 AC098590.1-201ENST00000468126 897 ntBASIC21.32■■□□□ 1
CDH9Q9ULB4 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
CDH9Q9ULB4 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.32■■□□□ 1
CDH9Q9ULB4 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.32■■□□□ 1
CDH9Q9ULB4 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CDH9Q9ULB4 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
CDH9Q9ULB4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.32■■□□□ 1
CDH9Q9ULB4 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CDH9Q9ULB4 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CDH9Q9ULB4 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CDH9Q9ULB4 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CDH9Q9ULB4 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.31■■□□□ 1
CDH9Q9ULB4 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.31■■□□□ 1
CDH9Q9ULB4 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
CDH9Q9ULB4 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
CDH9Q9ULB4 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.31■■□□□ 1
CDH9Q9ULB4 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
CDH9Q9ULB4 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.31■■□□□ 1
CDH9Q9ULB4 AC233263.1-201ENST00000578059 224 ntBASIC21.31■■□□□ 1
CDH9Q9ULB4 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
CDH9Q9ULB4 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.31■■□□□ 1
CDH9Q9ULB4 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CDH9Q9ULB4 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CDH9Q9ULB4 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.31■■□□□ 1
CDH9Q9ULB4 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDH9Q9ULB4 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.3■■□□□ 1
CDH9Q9ULB4 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDH9Q9ULB4 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
CDH9Q9ULB4 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms