Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CLCF1Q9UBD9 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 AC006128.1-201ENST00000624704 1661 ntBASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 AL121603.2-201ENST00000557373 2117 ntBASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 RPPH1-201ENST00000516869 333 ntBASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 C1QBPP2-201ENST00000528754 825 ntBASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLCF1Q9UBD9 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
CLCF1Q9UBD9 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.96■□□□□ 0.46
CLCF1Q9UBD9 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 CLDN5-201ENST00000403084 2357 ntBASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 AP006294.2-201ENST00000641667 209 ntBASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLCF1Q9UBD9 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 MTDHP1-201ENST00000605323 784 ntBASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLCF1Q9UBD9 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 UBE2SP1-201ENST00000450587 669 ntBASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 PTBP1P-201ENST00000554374 1601 ntBASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLCF1Q9UBD9 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms