Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC016405.3-201ENST00000607710 860 ntBASIC18■□□□□ 0.47
VSX1Q9NZR4 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
VSX1Q9NZR4 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VSX1Q9NZR4 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VSX1Q9NZR4 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
VSX1Q9NZR4 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18■□□□□ 0.47
VSX1Q9NZR4 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VSX1Q9NZR4 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 GXYLT1P2-201ENST00000433312 1230 ntBASIC17.99■□□□□ 0.47
VSX1Q9NZR4 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VSX1Q9NZR4 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 RARRES2P6-201ENST00000567333 442 ntBASIC17.98■□□□□ 0.47
VSX1Q9NZR4 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.98■□□□□ 0.47
VSX1Q9NZR4 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 AC016769.1-201ENST00000409132 1010 ntBASIC17.97■□□□□ 0.47
VSX1Q9NZR4 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 AC006015.1-201ENST00000429970 570 ntBASIC17.97■□□□□ 0.47
VSX1Q9NZR4 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 DUX4L16-201ENST00000555130 1264 ntBASIC17.97■□□□□ 0.47
VSX1Q9NZR4 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 AC100791.3-201ENST00000617619 330 ntBASIC17.97■□□□□ 0.47
VSX1Q9NZR4 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.97■□□□□ 0.47
VSX1Q9NZR4 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 CNN2P6-201ENST00000439038 900 ntBASIC17.96■□□□□ 0.47
VSX1Q9NZR4 RARRES2P4-201ENST00000514074 484 ntBASIC17.96■□□□□ 0.47
VSX1Q9NZR4 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 PCDHAC2-203ENST00000615316 3011 ntBASIC17.96■□□□□ 0.47
VSX1Q9NZR4 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
VSX1Q9NZR4 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
VSX1Q9NZR4 AFG3L1P-217ENST00000557444 2447 ntBASIC17.96■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms