Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VCX3AQ9NNX9 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.83■□□□□ 0.61
VCX3AQ9NNX9 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
VCX3AQ9NNX9 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.83■□□□□ 0.61
VCX3AQ9NNX9 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
VCX3AQ9NNX9 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.61
VCX3AQ9NNX9 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
VCX3AQ9NNX9 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VCX3AQ9NNX9 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
VCX3AQ9NNX9 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VCX3AQ9NNX9 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.83■□□□□ 0.61
VCX3AQ9NNX9 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.83■□□□□ 0.61
VCX3AQ9NNX9 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 FP700111.2-201ENST00000619190 1892 ntBASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VCX3AQ9NNX9 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VCX3AQ9NNX9 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 AL499627.2-201ENST00000606283 725 ntBASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 AC125437.2-201ENST00000625180 2167 ntBASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.81■□□□□ 0.6
VCX3AQ9NNX9 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
VCX3AQ9NNX9 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VCX3AQ9NNX9 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms