Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 AC012618.2-201ENST00000428058 849 ntBASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 AC239809.2-201ENST00000415381 517 ntBASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 AC133681.1-201ENST00000465482 601 ntBASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 AC233702.5-201ENST00000584107 538 ntBASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TM9SF3Q9HD45 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 RPS2P55-201ENST00000397318 883 ntBASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 AC107956.1-201ENST00000494359 873 ntBASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TM9SF3Q9HD45 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 AL390719.1-204ENST00000412397 1219 ntBASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 ECEL1P3-201ENST00000427961 737 ntBASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
TM9SF3Q9HD45 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
TM9SF3Q9HD45 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.14■□□□□ 0.81
TM9SF3Q9HD45 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TM9SF3Q9HD45 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TM9SF3Q9HD45 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TM9SF3Q9HD45 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
TM9SF3Q9HD45 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TM9SF3Q9HD45 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TM9SF3Q9HD45 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.14■□□□□ 0.81
TM9SF3Q9HD45 REXO1L12P-201ENST00000622156 912 ntBASIC20.14■□□□□ 0.81
TM9SF3Q9HD45 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TM9SF3Q9HD45 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.14■□□□□ 0.81
TM9SF3Q9HD45 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TM9SF3Q9HD45 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 KRASP1-201ENST00000407852 552 ntBASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms