Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.53■□□□□ 0.4
NKX3-1Q99801 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC17.53■□□□□ 0.4
NKX3-1Q99801 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 AC138907.5-202ENST00000569484 235 ntBASIC17.53■□□□□ 0.4
NKX3-1Q99801 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 AC087623.3-201ENST00000607047 1098 ntBASIC17.53■□□□□ 0.4
NKX3-1Q99801 AC104187.1-201ENST00000607510 612 ntBASIC17.53■□□□□ 0.4
NKX3-1Q99801 ANKRD20A6P-201ENST00000618763 204 ntBASIC17.53■□□□□ 0.4
NKX3-1Q99801 AL358852.1-201ENST00000623174 1268 ntBASIC17.53■□□□□ 0.4
NKX3-1Q99801 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
NKX3-1Q99801 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
NKX3-1Q99801 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NKX3-1Q99801 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX3-1Q99801 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX3-1Q99801 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX3-1Q99801 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NKX3-1Q99801 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NKX3-1Q99801 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX3-1Q99801 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.52■□□□□ 0.4
NKX3-1Q99801 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX3-1Q99801 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
NKX3-1Q99801 AC097381.1-201ENST00000429019 1296 ntBASIC17.52■□□□□ 0.4
NKX3-1Q99801 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX3-1Q99801 PLD4-205ENST00000553861 667 ntTSL 2 BASIC17.52■□□□□ 0.4
NKX3-1Q99801 MIR6821-201ENST00000617625 74 ntBASIC17.52■□□□□ 0.4
NKX3-1Q99801 MIR2861-201ENST00000636310 90 ntBASIC17.52■□□□□ 0.4
NKX3-1Q99801 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
NKX3-1Q99801 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.52■□□□□ 0.4
NKX3-1Q99801 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX3-1Q99801 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
NKX3-1Q99801 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
NKX3-1Q99801 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
NKX3-1Q99801 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.52■□□□□ 0.4
NKX3-1Q99801 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
NKX3-1Q99801 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
NKX3-1Q99801 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.52■□□□□ 0.39
NKX3-1Q99801 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
NKX3-1Q99801 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
NKX3-1Q99801 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX3-1Q99801 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.51■□□□□ 0.39
NKX3-1Q99801 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
NKX3-1Q99801 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
NKX3-1Q99801 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX3-1Q99801 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.51■□□□□ 0.39
NKX3-1Q99801 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX3-1Q99801 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX3-1Q99801 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX3-1Q99801 PTPA-214ENST00000423100 988 ntTSL 2 BASIC17.51■□□□□ 0.39
NKX3-1Q99801 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NKX3-1Q99801 AC010141.2-201ENST00000452426 721 ntBASIC17.51■□□□□ 0.39
NKX3-1Q99801 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.51■□□□□ 0.39
NKX3-1Q99801 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.51■□□□□ 0.39
NKX3-1Q99801 AC092666.2-201ENST00000613287 246 ntBASIC17.51■□□□□ 0.39
NKX3-1Q99801 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NKX3-1Q99801 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX3-1Q99801 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX3-1Q99801 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX3-1Q99801 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX3-1Q99801 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX3-1Q99801 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX3-1Q99801 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NKX3-1Q99801 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
NKX3-1Q99801 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
NKX3-1Q99801 AL020996.1-203ENST00000536896 2307 ntBASIC17.5■□□□□ 0.39
NKX3-1Q99801 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
NKX3-1Q99801 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
NKX3-1Q99801 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
NKX3-1Q99801 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.5■□□□□ 0.39
NKX3-1Q99801 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC17.5■□□□□ 0.39
NKX3-1Q99801 KRT16P2-201ENST00000414673 1423 ntBASIC17.5■□□□□ 0.39
NKX3-1Q99801 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
NKX3-1Q99801 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.5■□□□□ 0.39
NKX3-1Q99801 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC17.5■□□□□ 0.39
NKX3-1Q99801 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
NKX3-1Q99801 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
NKX3-1Q99801 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 AC116050.2-201ENST00000612102 1779 ntBASIC17.5■□□□□ 0.39
NKX3-1Q99801 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NKX3-1Q99801 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms