Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS13AQ96RL7 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VPS13AQ96RL7 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VPS13AQ96RL7 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS13AQ96RL7 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS13AQ96RL7 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS13AQ96RL7 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS13AQ96RL7 AC080038.3-201ENST00000623346 1952 ntBASIC20.11■□□□□ 0.81
VPS13AQ96RL7 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS13AQ96RL7 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS13AQ96RL7 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS13AQ96RL7 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS13AQ96RL7 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VPS13AQ96RL7 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS13AQ96RL7 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.1■□□□□ 0.81
VPS13AQ96RL7 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.1■□□□□ 0.81
VPS13AQ96RL7 FAM87A-204ENST00000613235 858 ntBASIC20.1■□□□□ 0.81
VPS13AQ96RL7 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.1■□□□□ 0.81
VPS13AQ96RL7 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 CLEC4GP1-201ENST00000596555 870 ntBASIC20.09■□□□□ 0.81
VPS13AQ96RL7 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 MESTP1-201ENST00000404287 994 ntBASIC20.09■□□□□ 0.81
VPS13AQ96RL7 AC116407.4-201ENST00000623319 1061 ntBASIC20.09■□□□□ 0.81
VPS13AQ96RL7 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.09■□□□□ 0.81
VPS13AQ96RL7 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS13AQ96RL7 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS13AQ96RL7 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
VPS13AQ96RL7 PVRIG2P-201ENST00000435460 978 ntBASIC20.08■□□□□ 0.81
VPS13AQ96RL7 LINC01238-205ENST00000567549 1107 ntBASIC20.08■□□□□ 0.81
VPS13AQ96RL7 AC139887.4-201ENST00000607877 719 ntBASIC20.08■□□□□ 0.81
VPS13AQ96RL7 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS13AQ96RL7 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
VPS13AQ96RL7 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
VPS13AQ96RL7 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS13AQ96RL7 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.08■□□□□ 0.8
VPS13AQ96RL7 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.08■□□□□ 0.8
VPS13AQ96RL7 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS13AQ96RL7 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.08■□□□□ 0.8
VPS13AQ96RL7 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.08■□□□□ 0.8
VPS13AQ96RL7 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS13AQ96RL7 AC026271.3-201ENST00000571884 352 ntBASIC20.08■□□□□ 0.8
VPS13AQ96RL7 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.08■□□□□ 0.8
VPS13AQ96RL7 AC093458.2-201ENST00000623150 629 ntBASIC20.08■□□□□ 0.8
VPS13AQ96RL7 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
VPS13AQ96RL7 FAM99A-202ENST00000538190 1989 ntBASIC20.08■□□□□ 0.8
VPS13AQ96RL7 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
VPS13AQ96RL7 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 KRT8P10-201ENST00000450021 1447 ntBASIC20.07■□□□□ 0.8
VPS13AQ96RL7 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 AC004264.1-201ENST00000608354 794 ntBASIC20.07■□□□□ 0.8
VPS13AQ96RL7 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 AC005332.1-201ENST00000577698 1310 ntBASIC20.07■□□□□ 0.8
VPS13AQ96RL7 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 YBX1P2-201ENST00000489612 999 ntBASIC20.07■□□□□ 0.8
VPS13AQ96RL7 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms