Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
ZNF560Q96MR9 AC006557.6-201ENST00000623071 864 ntBASIC21.6■■□□□ 1.05
ZNF560Q96MR9 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
ZNF560Q96MR9 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.6■■□□□ 1.05
ZNF560Q96MR9 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.6■■□□□ 1.05
ZNF560Q96MR9 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
ZNF560Q96MR9 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.6■■□□□ 1.05
ZNF560Q96MR9 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 KRT17P3-201ENST00000420566 1262 ntBASIC21.59■■□□□ 1.05
ZNF560Q96MR9 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.59■■□□□ 1.05
ZNF560Q96MR9 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.58■■□□□ 1.05
ZNF560Q96MR9 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
ZNF560Q96MR9 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
ZNF560Q96MR9 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
ZNF560Q96MR9 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
ZNF560Q96MR9 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
ZNF560Q96MR9 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
ZNF560Q96MR9 HLA-G-202ENST00000376815 851 ntBASIC21.58■■□□□ 1.05
ZNF560Q96MR9 HLA-G-203ENST00000376818 1127 ntBASIC21.58■■□□□ 1.05
ZNF560Q96MR9 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
ZNF560Q96MR9 AC128676.1-201ENST00000454392 318 ntBASIC21.58■■□□□ 1.05
ZNF560Q96MR9 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
ZNF560Q96MR9 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.58■■□□□ 1.05
ZNF560Q96MR9 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.58■■□□□ 1.05
ZNF560Q96MR9 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.58■■□□□ 1.05
ZNF560Q96MR9 AL031963.3-201ENST00000606441 850 ntBASIC21.58■■□□□ 1.05
ZNF560Q96MR9 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
ZNF560Q96MR9 PTBP1P-201ENST00000554374 1601 ntBASIC21.58■■□□□ 1.04
ZNF560Q96MR9 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.58■■□□□ 1.04
ZNF560Q96MR9 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
ZNF560Q96MR9 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
ZNF560Q96MR9 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.58■■□□□ 1.04
ZNF560Q96MR9 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 DPP3P2-201ENST00000416030 1696 ntBASIC21.57■■□□□ 1.04
ZNF560Q96MR9 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 POM121L13P-201ENST00000422362 380 ntBASIC21.57■■□□□ 1.04
ZNF560Q96MR9 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 AC073648.6-201ENST00000641589 218 ntBASIC21.57■■□□□ 1.04
ZNF560Q96MR9 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
ZNF560Q96MR9 CLDN5-201ENST00000403084 2357 ntBASIC21.56■■□□□ 1.04
ZNF560Q96MR9 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
ZNF560Q96MR9 KRT8P20-201ENST00000423953 1409 ntBASIC21.55■■□□□ 1.04
ZNF560Q96MR9 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.55■■□□□ 1.04
ZNF560Q96MR9 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
ZNF560Q96MR9 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.55■■□□□ 1.04
ZNF560Q96MR9 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF560Q96MR9 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF560Q96MR9 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.55■■□□□ 1.04
ZNF560Q96MR9 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.55■■□□□ 1.04
ZNF560Q96MR9 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF560Q96MR9 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.55■■□□□ 1.04
ZNF560Q96MR9 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms