Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 TSPY7P-201ENST00000431358 1114 ntBASIC19.71■□□□□ 0.75
LMX1AQ8TE12 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 AP001412.1-201ENST00000608405 714 ntBASIC19.7■□□□□ 0.74
LMX1AQ8TE12 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.7■□□□□ 0.74
LMX1AQ8TE12 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
LMX1AQ8TE12 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
LMX1AQ8TE12 AC124283.5-201ENST00000624661 1809 ntBASIC19.69■□□□□ 0.74
LMX1AQ8TE12 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.69■□□□□ 0.74
LMX1AQ8TE12 AL135905.2-201ENST00000584934 1404 ntBASIC19.69■□□□□ 0.74
LMX1AQ8TE12 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LMX1AQ8TE12 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LMX1AQ8TE12 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.69■□□□□ 0.74
LMX1AQ8TE12 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.69■□□□□ 0.74
LMX1AQ8TE12 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.69■□□□□ 0.74
LMX1AQ8TE12 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.69■□□□□ 0.74
LMX1AQ8TE12 AL049637.2-201ENST00000641778 930 ntBASIC19.69■□□□□ 0.74
LMX1AQ8TE12 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LMX1AQ8TE12 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LMX1AQ8TE12 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 AC073912.3-201ENST00000624414 853 ntBASIC19.68■□□□□ 0.74
LMX1AQ8TE12 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LMX1AQ8TE12 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 FEM1AP4-201ENST00000443167 1987 ntBASIC19.67■□□□□ 0.74
LMX1AQ8TE12 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 AL121829.2-201ENST00000620908 328 ntBASIC19.67■□□□□ 0.74
LMX1AQ8TE12 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 KRT17P2-201ENST00000300992 1314 ntBASIC19.67■□□□□ 0.74
LMX1AQ8TE12 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1AQ8TE12 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms