Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
NKX2-3Q8TAU0 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
NKX2-3Q8TAU0 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 FEM1AP1-201ENST00000431297 1995 ntBASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 AL589743.5-201ENST00000616611 1050 ntBASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC23.97■■□□□ 1.43
NKX2-3Q8TAU0 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 NME6-213ENST00000451657 871 ntTSL 2 BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 RPPH1-201ENST00000516869 333 ntBASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
NKX2-3Q8TAU0 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
NKX2-3Q8TAU0 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC23.95■■□□□ 1.43
NKX2-3Q8TAU0 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
NKX2-3Q8TAU0 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
NKX2-3Q8TAU0 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
NKX2-3Q8TAU0 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
NKX2-3Q8TAU0 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
NKX2-3Q8TAU0 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC23.95■■□□□ 1.42
NKX2-3Q8TAU0 RPS20-210ENST00000523936 899 ntTSL 2 BASIC23.95■■□□□ 1.42
NKX2-3Q8TAU0 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC23.95■■□□□ 1.42
NKX2-3Q8TAU0 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
NKX2-3Q8TAU0 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
NKX2-3Q8TAU0 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC23.95■■□□□ 1.42
NKX2-3Q8TAU0 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
NKX2-3Q8TAU0 H19-201ENST00000411754 1788 ntTSL 5 BASIC23.95■■□□□ 1.42
NKX2-3Q8TAU0 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC23.95■■□□□ 1.42
NKX2-3Q8TAU0 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
NKX2-3Q8TAU0 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
NKX2-3Q8TAU0 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NKX2-3Q8TAU0 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC23.94■■□□□ 1.42
NKX2-3Q8TAU0 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC23.94■■□□□ 1.42
NKX2-3Q8TAU0 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
NKX2-3Q8TAU0 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 GATS-209ENST00000454084 1030 ntTSL 3 BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 SNORA78-201ENST00000459373 127 ntBASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 KRT18P21-201ENST00000515767 1272 ntBASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 C2orf69P4-201ENST00000565394 541 ntBASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
NKX2-3Q8TAU0 AP005212.1-201ENST00000581547 1997 ntBASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 PTBP1P-201ENST00000554374 1601 ntBASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 C1QBPP2-201ENST00000528754 825 ntBASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC23.92■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms