Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 LINC01521-201ENST00000504184 1943 ntBASIC20.7■□□□□ 0.9
RTL3Q8N8U3 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 AL512408.1-201ENST00000569378 2000 ntBASIC20.7■□□□□ 0.9
RTL3Q8N8U3 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 AL162377.1-201ENST00000618844 1793 ntBASIC20.69■□□□□ 0.9
RTL3Q8N8U3 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RTL3Q8N8U3 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RTL3Q8N8U3 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 AC023632.3-201ENST00000521633 145 ntBASIC20.67■□□□□ 0.9
RTL3Q8N8U3 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.67■□□□□ 0.9
RTL3Q8N8U3 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 HLA-B-256ENST00000639848 1089 ntBASIC20.66■□□□□ 0.9
RTL3Q8N8U3 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
RTL3Q8N8U3 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms