Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
USP48Q86UV5 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
USP48Q86UV5 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
USP48Q86UV5 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC24.7■■□□□ 1.55
USP48Q86UV5 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
USP48Q86UV5 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC24.7■■□□□ 1.55
USP48Q86UV5 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
USP48Q86UV5 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC24.7■■□□□ 1.54
USP48Q86UV5 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
USP48Q86UV5 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
USP48Q86UV5 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.54
USP48Q86UV5 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
USP48Q86UV5 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.54
USP48Q86UV5 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC24.7■■□□□ 1.54
USP48Q86UV5 MIR4785-201ENST00000585005 73 ntBASIC24.7■■□□□ 1.54
USP48Q86UV5 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
USP48Q86UV5 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC24.7■■□□□ 1.54
USP48Q86UV5 AC012306.2-201ENST00000609350 630 ntBASIC24.7■■□□□ 1.54
USP48Q86UV5 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
USP48Q86UV5 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
USP48Q86UV5 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
USP48Q86UV5 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.54
USP48Q86UV5 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC24.7■■□□□ 1.54
USP48Q86UV5 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
USP48Q86UV5 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
USP48Q86UV5 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC24.7■■□□□ 1.54
USP48Q86UV5 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC24.7■■□□□ 1.54
USP48Q86UV5 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC24.7■■□□□ 1.54
USP48Q86UV5 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC24.7■■□□□ 1.54
USP48Q86UV5 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.54
USP48Q86UV5 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC24.7■■□□□ 1.54
USP48Q86UV5 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC24.69■■□□□ 1.54
USP48Q86UV5 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
USP48Q86UV5 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
USP48Q86UV5 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
USP48Q86UV5 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
USP48Q86UV5 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC24.69■■□□□ 1.54
USP48Q86UV5 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC24.69■■□□□ 1.54
USP48Q86UV5 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC24.69■■□□□ 1.54
USP48Q86UV5 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
USP48Q86UV5 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC24.69■■□□□ 1.54
USP48Q86UV5 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
USP48Q86UV5 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC24.69■■□□□ 1.54
USP48Q86UV5 AC133681.1-201ENST00000465482 601 ntBASIC24.69■■□□□ 1.54
USP48Q86UV5 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
USP48Q86UV5 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC24.69■■□□□ 1.54
USP48Q86UV5 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
USP48Q86UV5 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC24.69■■□□□ 1.54
USP48Q86UV5 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
USP48Q86UV5 PPOX-219ENST00000544598 813 ntTSL 2 BASIC24.69■■□□□ 1.54
USP48Q86UV5 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC24.69■■□□□ 1.54
USP48Q86UV5 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
USP48Q86UV5 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
USP48Q86UV5 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
USP48Q86UV5 MFF-203ENST00000349901 1716 ntTSL 2 BASIC24.69■■□□□ 1.54
USP48Q86UV5 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC24.69■■□□□ 1.54
USP48Q86UV5 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
USP48Q86UV5 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
USP48Q86UV5 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC24.68■■□□□ 1.54
USP48Q86UV5 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
USP48Q86UV5 SAPCD2P1-201ENST00000395413 1184 ntBASIC24.68■■□□□ 1.54
USP48Q86UV5 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC24.68■■□□□ 1.54
USP48Q86UV5 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC24.68■■□□□ 1.54
USP48Q86UV5 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC24.68■■□□□ 1.54
USP48Q86UV5 AC113410.3-201ENST00000623366 203 ntBASIC24.68■■□□□ 1.54
USP48Q86UV5 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
USP48Q86UV5 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
USP48Q86UV5 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
USP48Q86UV5 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
USP48Q86UV5 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
USP48Q86UV5 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC24.68■■□□□ 1.54
USP48Q86UV5 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC24.67■■□□□ 1.54
USP48Q86UV5 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
USP48Q86UV5 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
USP48Q86UV5 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC24.67■■□□□ 1.54
USP48Q86UV5 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
USP48Q86UV5 AC007322.3-201ENST00000426526 701 ntBASIC24.67■■□□□ 1.54
USP48Q86UV5 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC24.67■■□□□ 1.54
USP48Q86UV5 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
USP48Q86UV5 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC24.67■■□□□ 1.54
USP48Q86UV5 AL355075.4-201ENST00000554988 638 ntBASIC24.67■■□□□ 1.54
USP48Q86UV5 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
USP48Q86UV5 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
USP48Q86UV5 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC24.67■■□□□ 1.54
USP48Q86UV5 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC24.67■■□□□ 1.54
USP48Q86UV5 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
USP48Q86UV5 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
USP48Q86UV5 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
USP48Q86UV5 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP48Q86UV5 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP48Q86UV5 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP48Q86UV5 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC24.66■■□□□ 1.54
USP48Q86UV5 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP48Q86UV5 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP48Q86UV5 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
USP48Q86UV5 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP48Q86UV5 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC24.66■■□□□ 1.54
USP48Q86UV5 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP48Q86UV5 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC24.66■■□□□ 1.54
USP48Q86UV5 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC24.66■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms