Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 AP000525.1-201ENST00000608286 694 ntBASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
CSPG4Q6UVK1 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 SLC25A3P1-201ENST00000443844 931 ntBASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 KRT16P5-201ENST00000455284 522 ntBASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 C2orf69P3-201ENST00000565542 1120 ntBASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 RER1-204ENST00000378518 522 ntTSL 3 BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 AC116562.2-201ENST00000507042 360 ntBASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC16.68■□□□□ 0.26
CSPG4Q6UVK1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 FITM1-202ENST00000559294 800 ntBASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CSPG4Q6UVK1 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CSPG4Q6UVK1 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CSPG4Q6UVK1 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CSPG4Q6UVK1 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CSPG4Q6UVK1 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CSPG4Q6UVK1 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.66■□□□□ 0.26
CSPG4Q6UVK1 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC16.66■□□□□ 0.26
CSPG4Q6UVK1 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
CSPG4Q6UVK1 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.66■□□□□ 0.26
CSPG4Q6UVK1 AL356652.1-201ENST00000615962 565 ntBASIC16.66■□□□□ 0.26
CSPG4Q6UVK1 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.66■□□□□ 0.26
CSPG4Q6UVK1 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CSPG4Q6UVK1 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CSPG4Q6UVK1 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms