Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT39Q6A163 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
KRT39Q6A163 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
KRT39Q6A163 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
KRT39Q6A163 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.8■■□□□ 1.08
KRT39Q6A163 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.8■■□□□ 1.08
KRT39Q6A163 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.8■■□□□ 1.08
KRT39Q6A163 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
KRT39Q6A163 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT39Q6A163 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.8■■□□□ 1.08
KRT39Q6A163 SLC29A4P1-201ENST00000398760 971 ntBASIC21.8■■□□□ 1.08
KRT39Q6A163 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
KRT39Q6A163 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.8■■□□□ 1.08
KRT39Q6A163 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.8■■□□□ 1.08
KRT39Q6A163 C2orf69P4-201ENST00000565394 541 ntBASIC21.8■■□□□ 1.08
KRT39Q6A163 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.8■■□□□ 1.08
KRT39Q6A163 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.8■■□□□ 1.08
KRT39Q6A163 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
KRT39Q6A163 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.8■■□□□ 1.08
KRT39Q6A163 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT39Q6A163 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.8■■□□□ 1.08
KRT39Q6A163 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
KRT39Q6A163 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT39Q6A163 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
KRT39Q6A163 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
KRT39Q6A163 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.79■■□□□ 1.08
KRT39Q6A163 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
KRT39Q6A163 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
KRT39Q6A163 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.79■■□□□ 1.08
KRT39Q6A163 AC099778.1-201ENST00000568593 1911 ntBASIC21.79■■□□□ 1.08
KRT39Q6A163 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
KRT39Q6A163 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
KRT39Q6A163 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
KRT39Q6A163 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT39Q6A163 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.79■■□□□ 1.08
KRT39Q6A163 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.79■■□□□ 1.08
KRT39Q6A163 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
KRT39Q6A163 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT39Q6A163 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT39Q6A163 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT39Q6A163 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
KRT39Q6A163 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
KRT39Q6A163 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
KRT39Q6A163 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT39Q6A163 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
KRT39Q6A163 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
KRT39Q6A163 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
KRT39Q6A163 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
KRT39Q6A163 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT39Q6A163 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT39Q6A163 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT39Q6A163 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
KRT39Q6A163 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT39Q6A163 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT39Q6A163 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
KRT39Q6A163 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.78■■□□□ 1.08
KRT39Q6A163 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.78■■□□□ 1.08
KRT39Q6A163 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT39Q6A163 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
KRT39Q6A163 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
KRT39Q6A163 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT39Q6A163 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
KRT39Q6A163 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT39Q6A163 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT39Q6A163 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.78■■□□□ 1.08
KRT39Q6A163 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.78■■□□□ 1.08
KRT39Q6A163 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT39Q6A163 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.78■■□□□ 1.08
KRT39Q6A163 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.78■■□□□ 1.08
KRT39Q6A163 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT39Q6A163 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT39Q6A163 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT39Q6A163 PTBP1P-201ENST00000554374 1601 ntBASIC21.77■■□□□ 1.08
KRT39Q6A163 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT39Q6A163 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
KRT39Q6A163 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.77■■□□□ 1.08
KRT39Q6A163 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.77■■□□□ 1.08
KRT39Q6A163 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.77■■□□□ 1.08
KRT39Q6A163 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.77■■□□□ 1.08
KRT39Q6A163 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
KRT39Q6A163 AC092118.2-201ENST00000613495 667 ntBASIC21.77■■□□□ 1.08
KRT39Q6A163 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT39Q6A163 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT39Q6A163 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT39Q6A163 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.77■■□□□ 1.08
KRT39Q6A163 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.77■■□□□ 1.08
KRT39Q6A163 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
KRT39Q6A163 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
KRT39Q6A163 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
KRT39Q6A163 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT39Q6A163 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT39Q6A163 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
KRT39Q6A163 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT39Q6A163 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.76■■□□□ 1.07
KRT39Q6A163 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
KRT39Q6A163 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.76■■□□□ 1.07
KRT39Q6A163 AL391422.3-201ENST00000603791 2761 ntBASIC21.76■■□□□ 1.07
KRT39Q6A163 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT39Q6A163 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT39Q6A163 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms