Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC14.04□□□□□ -0.16
CKS1BP61024 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CKS1BP61024 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 AC003102.1-202ENST00000563394 1796 ntBASIC14.04□□□□□ -0.16
CKS1BP61024 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CKS1BP61024 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC14.04□□□□□ -0.16
CKS1BP61024 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC14.04□□□□□ -0.16
CKS1BP61024 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC14.04□□□□□ -0.16
CKS1BP61024 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC14.04□□□□□ -0.16
CKS1BP61024 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC14.04□□□□□ -0.16
CKS1BP61024 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC14.04□□□□□ -0.16
CKS1BP61024 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CKS1BP61024 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC14.04□□□□□ -0.16
CKS1BP61024 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CKS1BP61024 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CKS1BP61024 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 OR6D1P-202ENST00000641007 5290 ntBASIC14.04□□□□□ -0.16
CKS1BP61024 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC14.04□□□□□ -0.16
CKS1BP61024 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC14.04□□□□□ -0.16
CKS1BP61024 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CKS1BP61024 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CKS1BP61024 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.03□□□□□ -0.16
CKS1BP61024 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CKS1BP61024 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC14.03□□□□□ -0.16
CKS1BP61024 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC14.03□□□□□ -0.16
CKS1BP61024 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CKS1BP61024 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CKS1BP61024 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
CKS1BP61024 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC14.03□□□□□ -0.16
CKS1BP61024 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 SMG8-203ENST00000578922 2178 ntBASIC14.03□□□□□ -0.16
CKS1BP61024 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 AC112907.3-201ENST00000577781 2400 ntBASIC14.03□□□□□ -0.16
CKS1BP61024 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC14.03□□□□□ -0.16
CKS1BP61024 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CKS1BP61024 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CKS1BP61024 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
CKS1BP61024 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CKS1BP61024 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC14.02□□□□□ -0.16
CKS1BP61024 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CKS1BP61024 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC14.02□□□□□ -0.16
CKS1BP61024 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CKS1BP61024 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
CKS1BP61024 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CKS1BP61024 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CKS1BP61024 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CKS1BP61024 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC14.02□□□□□ -0.16
CKS1BP61024 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC14.02□□□□□ -0.16
CKS1BP61024 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CKS1BP61024 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC14.02□□□□□ -0.16
CKS1BP61024 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CKS1BP61024 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CKS1BP61024 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC14.02□□□□□ -0.17
CKS1BP61024 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC14.02□□□□□ -0.17
CKS1BP61024 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC14.02□□□□□ -0.17
CKS1BP61024 DUX4L19-201ENST00000557448 1267 ntBASIC14.02□□□□□ -0.17
CKS1BP61024 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CKS1BP61024 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC14.02□□□□□ -0.17
CKS1BP61024 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC14.02□□□□□ -0.17
CKS1BP61024 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC14.02□□□□□ -0.17
CKS1BP61024 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC14.02□□□□□ -0.17
CKS1BP61024 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC14.02□□□□□ -0.17
CKS1BP61024 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CKS1BP61024 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CKS1BP61024 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CKS1BP61024 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CKS1BP61024 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
CKS1BP61024 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms