Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CXCL12P48061 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.19■□□□□ 0.82
CXCL12P48061 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CXCL12P48061 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
CXCL12P48061 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CXCL12P48061 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CXCL12P48061 NIFKP9-201ENST00000419265 221 ntBASIC20.19■□□□□ 0.82
CXCL12P48061 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.19■□□□□ 0.82
CXCL12P48061 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.19■□□□□ 0.82
CXCL12P48061 AC104076.2-201ENST00000448912 469 ntBASIC20.19■□□□□ 0.82
CXCL12P48061 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.19■□□□□ 0.82
CXCL12P48061 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.19■□□□□ 0.82
CXCL12P48061 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.19■□□□□ 0.82
CXCL12P48061 KRT8P36-201ENST00000489121 1440 ntBASIC20.19■□□□□ 0.82
CXCL12P48061 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CXCL12P48061 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CXCL12P48061 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CXCL12P48061 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CXCL12P48061 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CXCL12P48061 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CXCL12P48061 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.18■□□□□ 0.82
CXCL12P48061 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.18■□□□□ 0.82
CXCL12P48061 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.18■□□□□ 0.82
CXCL12P48061 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.18■□□□□ 0.82
CXCL12P48061 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CXCL12P48061 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.18■□□□□ 0.82
CXCL12P48061 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.18■□□□□ 0.82
CXCL12P48061 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.18■□□□□ 0.82
CXCL12P48061 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.18■□□□□ 0.82
CXCL12P48061 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
CXCL12P48061 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.18■□□□□ 0.82
CXCL12P48061 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CXCL12P48061 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CXCL12P48061 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CXCL12P48061 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CXCL12P48061 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CXCL12P48061 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.17■□□□□ 0.82
CXCL12P48061 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CXCL12P48061 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CXCL12P48061 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.17■□□□□ 0.82
CXCL12P48061 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CXCL12P48061 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.17■□□□□ 0.82
CXCL12P48061 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CXCL12P48061 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.17■□□□□ 0.82
CXCL12P48061 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CXCL12P48061 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.17■□□□□ 0.82
CXCL12P48061 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.17■□□□□ 0.82
CXCL12P48061 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.17■□□□□ 0.82
CXCL12P48061 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CXCL12P48061 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.17■□□□□ 0.82
CXCL12P48061 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.17■□□□□ 0.82
CXCL12P48061 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CXCL12P48061 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CXCL12P48061 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.17■□□□□ 0.82
CXCL12P48061 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.17■□□□□ 0.82
CXCL12P48061 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CXCL12P48061 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CXCL12P48061 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CXCL12P48061 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CXCL12P48061 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.16■□□□□ 0.82
CXCL12P48061 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 HLA-G-202ENST00000376815 851 ntBASIC20.16■□□□□ 0.82
CXCL12P48061 HLA-G-203ENST00000376818 1127 ntBASIC20.16■□□□□ 0.82
CXCL12P48061 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.16■□□□□ 0.82
CXCL12P48061 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 LIN28AP1-201ENST00000429574 405 ntBASIC20.16■□□□□ 0.82
CXCL12P48061 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.16■□□□□ 0.82
CXCL12P48061 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.16■□□□□ 0.82
CXCL12P48061 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.16■□□□□ 0.82
CXCL12P48061 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CXCL12P48061 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CXCL12P48061 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CXCL12P48061 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CXCL12P48061 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
CXCL12P48061 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.15■□□□□ 0.82
CXCL12P48061 C9orf163-202ENST00000624034 2573 ntBASIC20.15■□□□□ 0.82
CXCL12P48061 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
CXCL12P48061 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CXCL12P48061 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.15■□□□□ 0.82
CXCL12P48061 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
CXCL12P48061 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.15■□□□□ 0.82
CXCL12P48061 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.15■□□□□ 0.82
CXCL12P48061 AC027702.1-201ENST00000563810 1770 ntBASIC20.15■□□□□ 0.82
CXCL12P48061 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.15■□□□□ 0.82
CXCL12P48061 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CXCL12P48061 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.15■□□□□ 0.82
CXCL12P48061 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms