Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
HNF4AP41235 AC090192.1-201ENST00000517740 490 ntBASIC19.55■□□□□ 0.72
HNF4AP41235 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HNF4AP41235 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HNF4AP41235 AL050303.2-201ENST00000619798 666 ntBASIC19.55■□□□□ 0.72
HNF4AP41235 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HNF4AP41235 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HNF4AP41235 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HNF4AP41235 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
HNF4AP41235 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.54■□□□□ 0.72
HNF4AP41235 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.54■□□□□ 0.72
HNF4AP41235 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
HNF4AP41235 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.54■□□□□ 0.72
HNF4AP41235 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.54■□□□□ 0.72
HNF4AP41235 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.54■□□□□ 0.72
HNF4AP41235 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.54■□□□□ 0.72
HNF4AP41235 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.54■□□□□ 0.72
HNF4AP41235 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
HNF4AP41235 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HNF4AP41235 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HNF4AP41235 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.53■□□□□ 0.72
HNF4AP41235 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
HNF4AP41235 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HNF4AP41235 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HNF4AP41235 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HNF4AP41235 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HNF4AP41235 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HNF4AP41235 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HNF4AP41235 MCRIP2P1-201ENST00000394346 511 ntBASIC19.53■□□□□ 0.72
HNF4AP41235 AC093787.1-201ENST00000450396 207 ntBASIC19.53■□□□□ 0.72
HNF4AP41235 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.53■□□□□ 0.72
HNF4AP41235 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HNF4AP41235 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HNF4AP41235 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.53■□□□□ 0.72
HNF4AP41235 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HNF4AP41235 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HNF4AP41235 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HNF4AP41235 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.52■□□□□ 0.72
HNF4AP41235 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.52■□□□□ 0.72
HNF4AP41235 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
HNF4AP41235 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.52■□□□□ 0.72
HNF4AP41235 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.52■□□□□ 0.72
HNF4AP41235 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.52■□□□□ 0.72
HNF4AP41235 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
HNF4AP41235 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HNF4AP41235 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HNF4AP41235 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.52■□□□□ 0.71
HNF4AP41235 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
HNF4AP41235 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HNF4AP41235 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.52■□□□□ 0.71
HNF4AP41235 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HNF4AP41235 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
HNF4AP41235 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.52■□□□□ 0.71
HNF4AP41235 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HNF4AP41235 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HNF4AP41235 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.51■□□□□ 0.71
HNF4AP41235 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.51■□□□□ 0.71
HNF4AP41235 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HNF4AP41235 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HNF4AP41235 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
HNF4AP41235 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.51■□□□□ 0.71
HNF4AP41235 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.51■□□□□ 0.71
HNF4AP41235 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.51■□□□□ 0.71
HNF4AP41235 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
HNF4AP41235 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.51■□□□□ 0.71
HNF4AP41235 AC105036.2-201ENST00000569468 176 ntBASIC19.51■□□□□ 0.71
HNF4AP41235 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.51■□□□□ 0.71
HNF4AP41235 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HNF4AP41235 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HNF4AP41235 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HNF4AP41235 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.51■□□□□ 0.71
HNF4AP41235 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HNF4AP41235 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
HNF4AP41235 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HNF4AP41235 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HNF4AP41235 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HNF4AP41235 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HNF4AP41235 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.51■□□□□ 0.71
HNF4AP41235 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.51■□□□□ 0.71
HNF4AP41235 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HNF4AP41235 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HNF4AP41235 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
HNF4AP41235 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.5■□□□□ 0.71
HNF4AP41235 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HNF4AP41235 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HNF4AP41235 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms