Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
BRCA1P38398 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
BRCA1P38398 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
BRCA1P38398 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
BRCA1P38398 PTBP1P-201ENST00000554374 1601 ntBASIC24.82■■□□□ 1.56
BRCA1P38398 SAPCD2P2-201ENST00000431719 1174 ntBASIC24.82■■□□□ 1.56
BRCA1P38398 ATP5G1P1-201ENST00000448724 379 ntBASIC24.82■■□□□ 1.56
BRCA1P38398 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC24.82■■□□□ 1.56
BRCA1P38398 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC24.82■■□□□ 1.56
BRCA1P38398 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC24.82■■□□□ 1.56
BRCA1P38398 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
BRCA1P38398 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC24.82■■□□□ 1.56
BRCA1P38398 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
BRCA1P38398 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
BRCA1P38398 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
BRCA1P38398 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC24.81■■□□□ 1.56
BRCA1P38398 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
BRCA1P38398 B3GAT3P1-201ENST00000471720 806 ntBASIC24.81■■□□□ 1.56
BRCA1P38398 AC128688.1-201ENST00000487626 519 ntBASIC24.81■■□□□ 1.56
BRCA1P38398 YBX1P2-201ENST00000489612 999 ntBASIC24.81■■□□□ 1.56
BRCA1P38398 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC24.81■■□□□ 1.56
BRCA1P38398 AC116407.4-201ENST00000623319 1061 ntBASIC24.81■■□□□ 1.56
BRCA1P38398 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
BRCA1P38398 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC24.81■■□□□ 1.56
BRCA1P38398 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC24.81■■□□□ 1.56
BRCA1P38398 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC24.81■■□□□ 1.56
BRCA1P38398 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC24.81■■□□□ 1.56
BRCA1P38398 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
BRCA1P38398 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC24.81■■□□□ 1.56
BRCA1P38398 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
BRCA1P38398 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
BRCA1P38398 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
BRCA1P38398 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
BRCA1P38398 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
BRCA1P38398 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC24.8■■□□□ 1.56
BRCA1P38398 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC24.8■■□□□ 1.56
BRCA1P38398 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC24.8■■□□□ 1.56
BRCA1P38398 MIR2861-201ENST00000636310 90 ntBASIC24.8■■□□□ 1.56
BRCA1P38398 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC24.8■■□□□ 1.56
BRCA1P38398 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC24.8■■□□□ 1.56
BRCA1P38398 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
BRCA1P38398 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC24.79■■□□□ 1.56
BRCA1P38398 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
BRCA1P38398 FSCN1P1-201ENST00000568912 1481 ntBASIC24.79■■□□□ 1.56
BRCA1P38398 INGX-201ENST00000359239 846 ntBASIC24.79■■□□□ 1.56
BRCA1P38398 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
BRCA1P38398 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC24.79■■□□□ 1.56
BRCA1P38398 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
BRCA1P38398 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC24.79■■□□□ 1.56
BRCA1P38398 SLC25A1P4-201ENST00000567977 778 ntBASIC24.79■■□□□ 1.56
BRCA1P38398 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC24.79■■□□□ 1.56
BRCA1P38398 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
BRCA1P38398 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
BRCA1P38398 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
BRCA1P38398 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
BRCA1P38398 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC24.79■■□□□ 1.56
BRCA1P38398 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
BRCA1P38398 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
BRCA1P38398 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
BRCA1P38398 PPP1R14BP5-201ENST00000440334 435 ntBASIC24.79■■□□□ 1.56
BRCA1P38398 DBP-204ENST00000599385 709 ntTSL 3 BASIC24.79■■□□□ 1.56
BRCA1P38398 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
BRCA1P38398 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC24.79■■□□□ 1.56
BRCA1P38398 STK25-205ENST00000405883 1904 ntTSL 2 BASIC24.78■■□□□ 1.56
BRCA1P38398 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
BRCA1P38398 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC24.78■■□□□ 1.56
BRCA1P38398 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
BRCA1P38398 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC24.78■■□□□ 1.56
BRCA1P38398 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC24.78■■□□□ 1.56
BRCA1P38398 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC24.78■■□□□ 1.56
BRCA1P38398 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC24.78■■□□□ 1.56
BRCA1P38398 AC091390.4-202ENST00000476426 537 ntBASIC24.78■■□□□ 1.56
BRCA1P38398 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC24.78■■□□□ 1.56
BRCA1P38398 FAM87A-204ENST00000613235 858 ntBASIC24.78■■□□□ 1.56
BRCA1P38398 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC24.78■■□□□ 1.56
BRCA1P38398 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC24.78■■□□□ 1.56
BRCA1P38398 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
BRCA1P38398 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC24.77■■□□□ 1.56
BRCA1P38398 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
BRCA1P38398 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
BRCA1P38398 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC24.77■■□□□ 1.56
BRCA1P38398 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
BRCA1P38398 AL450487.1-201ENST00000426799 995 ntBASIC24.77■■□□□ 1.56
BRCA1P38398 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC24.77■■□□□ 1.56
BRCA1P38398 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
BRCA1P38398 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC24.77■■□□□ 1.56
BRCA1P38398 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
BRCA1P38398 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
BRCA1P38398 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
BRCA1P38398 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC24.77■■□□□ 1.56
BRCA1P38398 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
BRCA1P38398 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
BRCA1P38398 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC24.77■■□□□ 1.56
BRCA1P38398 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC24.77■■□□□ 1.56
BRCA1P38398 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
BRCA1P38398 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
BRCA1P38398 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
BRCA1P38398 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
BRCA1P38398 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
BRCA1P38398 HMGA1P5-201ENST00000412453 271 ntBASIC24.77■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms