Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH3P20585 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH3P20585 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH3P20585 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.07■□□□□ 0.8
MSH3P20585 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.06■□□□□ 0.8
MSH3P20585 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH3P20585 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
MSH3P20585 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH3P20585 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH3P20585 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH3P20585 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.06■□□□□ 0.8
MSH3P20585 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH3P20585 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH3P20585 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
MSH3P20585 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
MSH3P20585 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH3P20585 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.06■□□□□ 0.8
MSH3P20585 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
MSH3P20585 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.06■□□□□ 0.8
MSH3P20585 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.06■□□□□ 0.8
MSH3P20585 DUSP5P2-201ENST00000426873 1033 ntBASIC20.06■□□□□ 0.8
MSH3P20585 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.06■□□□□ 0.8
MSH3P20585 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.06■□□□□ 0.8
MSH3P20585 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.06■□□□□ 0.8
MSH3P20585 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.06■□□□□ 0.8
MSH3P20585 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.06■□□□□ 0.8
MSH3P20585 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
MSH3P20585 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
MSH3P20585 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
MSH3P20585 AP005212.1-201ENST00000581547 1997 ntBASIC20.06■□□□□ 0.8
MSH3P20585 AC092720.2-201ENST00000602388 1665 ntBASIC20.06■□□□□ 0.8
MSH3P20585 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH3P20585 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH3P20585 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.05■□□□□ 0.8
MSH3P20585 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MSH3P20585 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH3P20585 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH3P20585 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
MSH3P20585 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.05■□□□□ 0.8
MSH3P20585 AC069152.1-201ENST00000438030 544 ntBASIC20.05■□□□□ 0.8
MSH3P20585 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
MSH3P20585 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.05■□□□□ 0.8
MSH3P20585 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.05■□□□□ 0.8
MSH3P20585 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH3P20585 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH3P20585 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH3P20585 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH3P20585 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH3P20585 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH3P20585 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH3P20585 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MSH3P20585 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
MSH3P20585 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
MSH3P20585 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH3P20585 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
MSH3P20585 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH3P20585 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH3P20585 AC073210.2-201ENST00000430369 194 ntBASIC20.04■□□□□ 0.8
MSH3P20585 AC097658.1-201ENST00000475555 843 ntBASIC20.04■□□□□ 0.8
MSH3P20585 AC091874.3-201ENST00000512672 1195 ntBASIC20.04■□□□□ 0.8
MSH3P20585 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.04■□□□□ 0.8
MSH3P20585 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MSH3P20585 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MSH3P20585 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.04■□□□□ 0.8
MSH3P20585 C2orf69P4-201ENST00000565394 541 ntBASIC20.04■□□□□ 0.8
MSH3P20585 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.04■□□□□ 0.8
MSH3P20585 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.04■□□□□ 0.8
MSH3P20585 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSH3P20585 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
MSH3P20585 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH3P20585 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSH3P20585 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSH3P20585 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSH3P20585 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.03■□□□□ 0.8
MSH3P20585 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.03■□□□□ 0.8
MSH3P20585 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSH3P20585 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.03■□□□□ 0.8
MSH3P20585 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.03■□□□□ 0.8
MSH3P20585 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSH3P20585 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.03■□□□□ 0.8
MSH3P20585 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.03■□□□□ 0.8
MSH3P20585 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.03■□□□□ 0.8
MSH3P20585 AC098934.4-201ENST00000564127 592 ntBASIC20.03■□□□□ 0.8
MSH3P20585 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSH3P20585 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.03■□□□□ 0.8
MSH3P20585 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSH3P20585 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.03■□□□□ 0.8
MSH3P20585 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
MSH3P20585 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
MSH3P20585 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
MSH3P20585 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH3P20585 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH3P20585 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSH3P20585 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.02■□□□□ 0.8
MSH3P20585 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MSH3P20585 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.02■□□□□ 0.8
MSH3P20585 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.02■□□□□ 0.8
MSH3P20585 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.02■□□□□ 0.8
MSH3P20585 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
MSH3P20585 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms