Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SGCEO43556 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
SGCEO43556 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.79■□□□□ 0.44
SGCEO43556 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SGCEO43556 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SGCEO43556 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.79■□□□□ 0.44
SGCEO43556 AC008694.1-202ENST00000636953 945 ntBASIC17.79■□□□□ 0.44
SGCEO43556 DET1-207ENST00000564406 2315 ntTSL 2 BASIC17.79■□□□□ 0.44
SGCEO43556 CYP21A1P-202ENST00000354927 1481 ntBASIC17.79■□□□□ 0.44
SGCEO43556 AC087633.2-202ENST00000565166 1439 ntBASIC17.79■□□□□ 0.44
SGCEO43556 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SGCEO43556 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SGCEO43556 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SGCEO43556 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SGCEO43556 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
SGCEO43556 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.79■□□□□ 0.44
SGCEO43556 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SGCEO43556 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.78■□□□□ 0.44
SGCEO43556 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SGCEO43556 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SGCEO43556 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SGCEO43556 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SGCEO43556 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC17.78■□□□□ 0.44
SGCEO43556 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SGCEO43556 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.78■□□□□ 0.44
SGCEO43556 CYP2T1P-201ENST00000432607 1285 ntBASIC17.78■□□□□ 0.44
SGCEO43556 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC17.78■□□□□ 0.44
SGCEO43556 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.78■□□□□ 0.44
SGCEO43556 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC17.78■□□□□ 0.44
SGCEO43556 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SGCEO43556 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SGCEO43556 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
SGCEO43556 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SGCEO43556 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SGCEO43556 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SGCEO43556 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SGCEO43556 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SGCEO43556 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SGCEO43556 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SGCEO43556 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SGCEO43556 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SGCEO43556 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC17.77■□□□□ 0.44
SGCEO43556 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SGCEO43556 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
SGCEO43556 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SGCEO43556 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SGCEO43556 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
SGCEO43556 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SGCEO43556 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
SGCEO43556 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SGCEO43556 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SGCEO43556 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SGCEO43556 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
SGCEO43556 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SGCEO43556 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
SGCEO43556 AC004911.1-201ENST00000416316 871 ntBASIC17.77■□□□□ 0.44
SGCEO43556 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.77■□□□□ 0.44
SGCEO43556 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC17.77■□□□□ 0.44
SGCEO43556 AC080038.1-201ENST00000611274 1154 ntBASIC17.77■□□□□ 0.44
SGCEO43556 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SGCEO43556 AL356652.1-201ENST00000615962 565 ntBASIC17.77■□□□□ 0.44
SGCEO43556 MAZ-216ENST00000616501 991 ntTSL 5 BASIC17.77■□□□□ 0.44
SGCEO43556 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SGCEO43556 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.77■□□□□ 0.43
SGCEO43556 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SGCEO43556 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SGCEO43556 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.77■□□□□ 0.43
SGCEO43556 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.77■□□□□ 0.43
SGCEO43556 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SGCEO43556 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SGCEO43556 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.76■□□□□ 0.43
SGCEO43556 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SGCEO43556 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SGCEO43556 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SGCEO43556 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SGCEO43556 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SGCEO43556 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SGCEO43556 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SGCEO43556 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SGCEO43556 AC138932.1-201ENST00000534164 6830 ntBASIC17.76■□□□□ 0.43
SGCEO43556 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SGCEO43556 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SGCEO43556 MCRIP2P1-201ENST00000394346 511 ntBASIC17.76■□□□□ 0.43
SGCEO43556 APTR-203ENST00000430801 583 ntTSL 5 BASIC17.76■□□□□ 0.43
SGCEO43556 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC17.76■□□□□ 0.43
SGCEO43556 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SGCEO43556 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.76■□□□□ 0.43
SGCEO43556 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.76■□□□□ 0.43
SGCEO43556 AC100791.3-201ENST00000617619 330 ntBASIC17.76■□□□□ 0.43
SGCEO43556 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC17.76■□□□□ 0.43
SGCEO43556 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.76■□□□□ 0.43
SGCEO43556 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SGCEO43556 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SGCEO43556 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.76■□□□□ 0.43
SGCEO43556 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.76■□□□□ 0.43
SGCEO43556 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.76■□□□□ 0.43
SGCEO43556 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SGCEO43556 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SGCEO43556 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.75■□□□□ 0.43
SGCEO43556 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms