Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDCBPO00560 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDCBPO00560 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SDCBPO00560 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDCBPO00560 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDCBPO00560 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.11■□□□□ 0.33
SDCBPO00560 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SDCBPO00560 AL158211.5-201ENST00000623583 2518 ntBASIC17.11■□□□□ 0.33
SDCBPO00560 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.11■□□□□ 0.33
SDCBPO00560 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.11■□□□□ 0.33
SDCBPO00560 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SDCBPO00560 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SDCBPO00560 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDCBPO00560 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
SDCBPO00560 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.1■□□□□ 0.33
SDCBPO00560 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDCBPO00560 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.1■□□□□ 0.33
SDCBPO00560 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
SDCBPO00560 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDCBPO00560 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.1■□□□□ 0.33
SDCBPO00560 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDCBPO00560 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDCBPO00560 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDCBPO00560 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.1■□□□□ 0.33
SDCBPO00560 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC17.1■□□□□ 0.33
SDCBPO00560 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.1■□□□□ 0.33
SDCBPO00560 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC17.1■□□□□ 0.33
SDCBPO00560 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.1■□□□□ 0.33
SDCBPO00560 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC17.1■□□□□ 0.33
SDCBPO00560 AP001160.3-201ENST00000601484 763 ntBASIC17.1■□□□□ 0.33
SDCBPO00560 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDCBPO00560 KRT16P2-201ENST00000414673 1423 ntBASIC17.1■□□□□ 0.33
SDCBPO00560 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDCBPO00560 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDCBPO00560 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDCBPO00560 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDCBPO00560 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.1■□□□□ 0.33
SDCBPO00560 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC17.1■□□□□ 0.33
SDCBPO00560 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDCBPO00560 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SDCBPO00560 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SDCBPO00560 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDCBPO00560 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDCBPO00560 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SDCBPO00560 AC245052.3-201ENST00000450182 901 ntBASIC17.09■□□□□ 0.33
SDCBPO00560 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC17.09■□□□□ 0.33
SDCBPO00560 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC17.09■□□□□ 0.33
SDCBPO00560 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SDCBPO00560 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SDCBPO00560 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SDCBPO00560 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDCBPO00560 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SDCBPO00560 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SDCBPO00560 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDCBPO00560 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDCBPO00560 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.09■□□□□ 0.33
SDCBPO00560 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.09■□□□□ 0.33
SDCBPO00560 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.09■□□□□ 0.33
SDCBPO00560 AC125437.2-201ENST00000625180 2167 ntBASIC17.09■□□□□ 0.33
SDCBPO00560 AC138932.1-201ENST00000534164 6830 ntBASIC17.09■□□□□ 0.33
SDCBPO00560 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SDCBPO00560 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.09■□□□□ 0.33
SDCBPO00560 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDCBPO00560 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
SDCBPO00560 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SDCBPO00560 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SDCBPO00560 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
SDCBPO00560 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SDCBPO00560 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
SDCBPO00560 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDCBPO00560 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDCBPO00560 AC004854.2-201ENST00000608450 1441 ntBASIC17.08■□□□□ 0.32
SDCBPO00560 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SDCBPO00560 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC17.08■□□□□ 0.32
SDCBPO00560 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDCBPO00560 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SDCBPO00560 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC17.08■□□□□ 0.32
SDCBPO00560 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
SDCBPO00560 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.08■□□□□ 0.32
SDCBPO00560 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SDCBPO00560 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDCBPO00560 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SDCBPO00560 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SDCBPO00560 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.07■□□□□ 0.32
SDCBPO00560 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDCBPO00560 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDCBPO00560 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SDCBPO00560 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SDCBPO00560 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDCBPO00560 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDCBPO00560 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDCBPO00560 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDCBPO00560 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.07■□□□□ 0.32
SDCBPO00560 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDCBPO00560 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.07■□□□□ 0.32
SDCBPO00560 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDCBPO00560 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
SDCBPO00560 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.07■□□□□ 0.32
SDCBPO00560 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SDCBPO00560 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms