Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
HMGN4O00479 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGN4O00479 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGN4O00479 AC068338.2-201ENST00000563278 1430 ntBASIC18.78■□□□□ 0.6
HMGN4O00479 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGN4O00479 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HMGN4O00479 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.78■□□□□ 0.6
HMGN4O00479 RARRES2P4-201ENST00000514074 484 ntBASIC18.78■□□□□ 0.6
HMGN4O00479 AC011767.1-201ENST00000617410 1153 ntBASIC18.78■□□□□ 0.6
HMGN4O00479 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
HMGN4O00479 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
HMGN4O00479 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGN4O00479 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.77■□□□□ 0.6
HMGN4O00479 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGN4O00479 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGN4O00479 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.77■□□□□ 0.6
HMGN4O00479 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
HMGN4O00479 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
HMGN4O00479 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.77■□□□□ 0.6
HMGN4O00479 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGN4O00479 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.77■□□□□ 0.6
HMGN4O00479 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
HMGN4O00479 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGN4O00479 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGN4O00479 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGN4O00479 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGN4O00479 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGN4O00479 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HMGN4O00479 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.77■□□□□ 0.59
HMGN4O00479 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
HMGN4O00479 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.76■□□□□ 0.59
HMGN4O00479 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.76■□□□□ 0.59
HMGN4O00479 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.76■□□□□ 0.59
HMGN4O00479 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.76■□□□□ 0.59
HMGN4O00479 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.76■□□□□ 0.59
HMGN4O00479 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
HMGN4O00479 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
HMGN4O00479 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.76■□□□□ 0.59
HMGN4O00479 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
HMGN4O00479 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.76■□□□□ 0.59
HMGN4O00479 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.76■□□□□ 0.59
HMGN4O00479 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.76■□□□□ 0.59
HMGN4O00479 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
HMGN4O00479 AC100791.3-201ENST00000617619 330 ntBASIC18.76■□□□□ 0.59
HMGN4O00479 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.76■□□□□ 0.59
HMGN4O00479 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
HMGN4O00479 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.76■□□□□ 0.59
HMGN4O00479 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.76■□□□□ 0.59
HMGN4O00479 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
HMGN4O00479 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
HMGN4O00479 AC125437.2-201ENST00000625180 2167 ntBASIC18.76■□□□□ 0.59
HMGN4O00479 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.76■□□□□ 0.59
HMGN4O00479 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGN4O00479 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.76■□□□□ 0.59
HMGN4O00479 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGN4O00479 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGN4O00479 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HMGN4O00479 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGN4O00479 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
HMGN4O00479 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGN4O00479 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HMGN4O00479 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HMGN4O00479 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HMGN4O00479 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGN4O00479 MCRIP2P1-201ENST00000394346 511 ntBASIC18.75■□□□□ 0.59
HMGN4O00479 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGN4O00479 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGN4O00479 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
HMGN4O00479 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGN4O00479 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.75■□□□□ 0.59
HMGN4O00479 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGN4O00479 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGN4O00479 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
HMGN4O00479 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
HMGN4O00479 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGN4O00479 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGN4O00479 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
HMGN4O00479 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
HMGN4O00479 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGN4O00479 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGN4O00479 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGN4O00479 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGN4O00479 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGN4O00479 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms