Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.12■□□□□ 0.97
PCDHA3Q9Y5H8 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 TERF1P5-201ENST00000477545 1207 ntBASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCDHA3Q9Y5H8 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHA3Q9Y5H8 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHA3Q9Y5H8 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
PCDHA3Q9Y5H8 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHA3Q9Y5H8 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
PCDHA3Q9Y5H8 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
PCDHA3Q9Y5H8 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.1■□□□□ 0.97
PCDHA3Q9Y5H8 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.1■□□□□ 0.97
PCDHA3Q9Y5H8 AL356652.1-201ENST00000615962 565 ntBASIC21.1■□□□□ 0.97
PCDHA3Q9Y5H8 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHA3Q9Y5H8 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCDHA3Q9Y5H8 AC087633.2-202ENST00000565166 1439 ntBASIC21.1■□□□□ 0.97
PCDHA3Q9Y5H8 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
PCDHA3Q9Y5H8 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 TMEM179-206ENST00000616017 1645 ntBASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 PGM5P4-201ENST00000421970 445 ntBASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 AL591742.1-201ENST00000604433 565 ntBASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 AC010536.3-201ENST00000620306 533 ntBASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.09■□□□□ 0.97
PCDHA3Q9Y5H8 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
PCDHA3Q9Y5H8 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
PCDHA3Q9Y5H8 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.08■□□□□ 0.97
PCDHA3Q9Y5H8 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHA3Q9Y5H8 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHA3Q9Y5H8 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.08■□□□□ 0.97
PCDHA3Q9Y5H8 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHA3Q9Y5H8 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHA3Q9Y5H8 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHA3Q9Y5H8 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHA3Q9Y5H8 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHA3Q9Y5H8 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.08■□□□□ 0.97
PCDHA3Q9Y5H8 NTF6G-201ENST00000591094 616 ntBASIC21.08■□□□□ 0.97
PCDHA3Q9Y5H8 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.08■□□□□ 0.97
PCDHA3Q9Y5H8 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PCDHA3Q9Y5H8 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PCDHA3Q9Y5H8 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.08■□□□□ 0.96
PCDHA3Q9Y5H8 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.08■□□□□ 0.96
PCDHA3Q9Y5H8 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
PCDHA3Q9Y5H8 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
PCDHA3Q9Y5H8 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.08■□□□□ 0.96
PCDHA3Q9Y5H8 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHA3Q9Y5H8 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHA3Q9Y5H8 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHA3Q9Y5H8 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.07■□□□□ 0.96
PCDHA3Q9Y5H8 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHA3Q9Y5H8 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms