Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 F2R-202ENST00000505600 442 ntTSL 2 BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 SRI-203ENST00000419179 1307 ntTSL 2 BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CDK11AQ9UQ88 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 MMP23A-201ENST00000234610 1017 ntBASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 AC073195.1-201ENST00000607241 877 ntBASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CDK11AQ9UQ88 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC31.4■■■□□ 2.62
CDK11AQ9UQ88 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CDK11AQ9UQ88 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC31.4■■■□□ 2.62
CDK11AQ9UQ88 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC31.4■■■□□ 2.62
CDK11AQ9UQ88 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC31.4■■■□□ 2.62
CDK11AQ9UQ88 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC31.4■■■□□ 2.62
CDK11AQ9UQ88 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
CDK11AQ9UQ88 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
CDK11AQ9UQ88 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CDK11AQ9UQ88 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
CDK11AQ9UQ88 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CDK11AQ9UQ88 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CDK11AQ9UQ88 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
CDK11AQ9UQ88 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC31.39■■■□□ 2.62
CDK11AQ9UQ88 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CDK11AQ9UQ88 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC31.39■■■□□ 2.62
CDK11AQ9UQ88 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC31.39■■■□□ 2.62
CDK11AQ9UQ88 AC244015.2-201ENST00000616358 1861 ntBASIC31.39■■■□□ 2.62
CDK11AQ9UQ88 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
CDK11AQ9UQ88 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
CDK11AQ9UQ88 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 FAM197Y1-201ENST00000421178 764 ntBASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 FDX2-207ENST00000494368 584 ntTSL 4 BASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 AC004264.1-201ENST00000608354 794 ntBASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC31.38■■■□□ 2.61
CDK11AQ9UQ88 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC31.37■■■□□ 2.61
CDK11AQ9UQ88 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC31.37■■■□□ 2.61
CDK11AQ9UQ88 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC31.37■■■□□ 2.61
CDK11AQ9UQ88 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CDK11AQ9UQ88 AC133561.1-201ENST00000568600 2415 ntBASIC31.36■■■□□ 2.61
CDK11AQ9UQ88 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC31.36■■■□□ 2.61
CDK11AQ9UQ88 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CDK11AQ9UQ88 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC31.36■■■□□ 2.61
CDK11AQ9UQ88 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
CDK11AQ9UQ88 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC31.36■■■□□ 2.61
CDK11AQ9UQ88 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CDK11AQ9UQ88 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CDK11AQ9UQ88 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC31.36■■■□□ 2.61
CDK11AQ9UQ88 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
CDK11AQ9UQ88 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CDK11AQ9UQ88 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CDK11AQ9UQ88 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC31.36■■■□□ 2.61
CDK11AQ9UQ88 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CDK11AQ9UQ88 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
CDK11AQ9UQ88 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC31.35■■■□□ 2.61
CDK11AQ9UQ88 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CDK11AQ9UQ88 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC31.35■■■□□ 2.61
CDK11AQ9UQ88 PNN-205ENST00000556530 601 ntTSL 2 BASIC31.35■■■□□ 2.61
CDK11AQ9UQ88 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC31.35■■■□□ 2.61
CDK11AQ9UQ88 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC31.35■■■□□ 2.61
CDK11AQ9UQ88 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
CDK11AQ9UQ88 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
CDK11AQ9UQ88 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC31.35■■■□□ 2.61
CDK11AQ9UQ88 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
CDK11AQ9UQ88 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
CDK11AQ9UQ88 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC31.34■■■□□ 2.61
CDK11AQ9UQ88 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC31.34■■■□□ 2.61
CDK11AQ9UQ88 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
CDK11AQ9UQ88 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms