Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SIX4Q9UIU6 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.68■■□□□ 1.06
SIX4Q9UIU6 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SIX4Q9UIU6 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SIX4Q9UIU6 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SIX4Q9UIU6 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.67■■□□□ 1.06
SIX4Q9UIU6 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.67■■□□□ 1.06
SIX4Q9UIU6 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SIX4Q9UIU6 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SIX4Q9UIU6 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SIX4Q9UIU6 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SIX4Q9UIU6 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.67■■□□□ 1.06
SIX4Q9UIU6 AC005829.2-201ENST00000571422 1056 ntBASIC21.67■■□□□ 1.06
SIX4Q9UIU6 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SIX4Q9UIU6 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SIX4Q9UIU6 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SIX4Q9UIU6 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SIX4Q9UIU6 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SIX4Q9UIU6 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SIX4Q9UIU6 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 ABHD17AP1-201ENST00000358206 933 ntBASIC21.66■■□□□ 1.06
SIX4Q9UIU6 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 AC008403.3-201ENST00000598924 454 ntBASIC21.66■■□□□ 1.06
SIX4Q9UIU6 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 AL157384.1-201ENST00000445995 2473 ntBASIC21.66■■□□□ 1.06
SIX4Q9UIU6 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.66■■□□□ 1.06
SIX4Q9UIU6 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 AC023632.3-201ENST00000521633 145 ntBASIC21.65■■□□□ 1.06
SIX4Q9UIU6 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 SMG8-203ENST00000578922 2178 ntBASIC21.65■■□□□ 1.06
SIX4Q9UIU6 AC092667.1-201ENST00000434301 2586 ntBASIC21.65■■□□□ 1.06
SIX4Q9UIU6 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX4Q9UIU6 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SIX4Q9UIU6 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.06
SIX4Q9UIU6 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SIX4Q9UIU6 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.64■■□□□ 1.05
SIX4Q9UIU6 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX4Q9UIU6 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.63■■□□□ 1.05
SIX4Q9UIU6 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX4Q9UIU6 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX4Q9UIU6 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SIX4Q9UIU6 ESRRAP1-201ENST00000400596 1257 ntBASIC21.63■■□□□ 1.05
SIX4Q9UIU6 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.63■■□□□ 1.05
SIX4Q9UIU6 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.63■■□□□ 1.05
SIX4Q9UIU6 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.63■■□□□ 1.05
SIX4Q9UIU6 UNC93B4-201ENST00000505679 747 ntBASIC21.63■■□□□ 1.05
SIX4Q9UIU6 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SIX4Q9UIU6 AP003097.1-201ENST00000530657 1135 ntBASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms