Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 SMG8-203ENST00000578922 2178 ntBASIC19.18■□□□□ 0.66
SCN3AQ9NY46 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SCN3AQ9NY46 PCDHAC2-203ENST00000615316 3011 ntBASIC19.16■□□□□ 0.66
SCN3AQ9NY46 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.16■□□□□ 0.66
SCN3AQ9NY46 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SCN3AQ9NY46 PNMA6B-201ENST00000538162 1200 ntBASIC19.16■□□□□ 0.66
SCN3AQ9NY46 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SCN3AQ9NY46 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SCN3AQ9NY46 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
SCN3AQ9NY46 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SCN3AQ9NY46 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SCN3AQ9NY46 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 AC060766.5-201ENST00000590539 871 ntBASIC19.15■□□□□ 0.66
SCN3AQ9NY46 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SCN3AQ9NY46 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.66
SCN3AQ9NY46 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.14■□□□□ 0.66
SCN3AQ9NY46 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.14■□□□□ 0.66
SCN3AQ9NY46 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SCN3AQ9NY46 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms