Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 AC005829.2-201ENST00000571422 1056 ntBASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 AC120498.8-201ENST00000614275 531 ntBASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 AC073912.3-201ENST00000624414 853 ntBASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TM9SF3Q9HD45 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 AL356652.1-201ENST00000615962 565 ntBASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 AC006557.6-201ENST00000623071 864 ntBASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 AL023875.1-201ENST00000640777 796 ntBASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TM9SF3Q9HD45 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 AC124016.1-201ENST00000609552 612 ntBASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TM9SF3Q9HD45 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TM9SF3Q9HD45 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms