Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.67■■□□□ 1.06
PAAF1Q9BRP4 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.67■■□□□ 1.06
PAAF1Q9BRP4 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PAAF1Q9BRP4 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PAAF1Q9BRP4 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PAAF1Q9BRP4 AC005229.4-201ENST00000610085 2198 ntBASIC21.67■■□□□ 1.06
PAAF1Q9BRP4 AC079834.2-201ENST00000609776 1949 ntBASIC21.67■■□□□ 1.06
PAAF1Q9BRP4 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.66■■□□□ 1.06
PAAF1Q9BRP4 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PAAF1Q9BRP4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
PAAF1Q9BRP4 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
PAAF1Q9BRP4 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
PAAF1Q9BRP4 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PAAF1Q9BRP4 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
PAAF1Q9BRP4 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.64■■□□□ 1.05
PAAF1Q9BRP4 PTBP1P-201ENST00000554374 1601 ntBASIC21.64■■□□□ 1.05
PAAF1Q9BRP4 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
PAAF1Q9BRP4 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.64■■□□□ 1.05
PAAF1Q9BRP4 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PAAF1Q9BRP4 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
PAAF1Q9BRP4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 FP700111.2-201ENST00000619190 1892 ntBASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 KRASP1-201ENST00000407852 552 ntBASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 AC239809.2-201ENST00000415381 517 ntBASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 AC023632.3-201ENST00000521633 145 ntBASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
PAAF1Q9BRP4 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 AC133681.1-201ENST00000465482 601 ntBASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
PAAF1Q9BRP4 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PAAF1Q9BRP4 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms