Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.54■□□□□ 0.56
TIMP4Q99727 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
TIMP4Q99727 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TIMP4Q99727 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TIMP4Q99727 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TIMP4Q99727 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
TIMP4Q99727 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
TIMP4Q99727 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.54■□□□□ 0.56
TIMP4Q99727 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TIMP4Q99727 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TIMP4Q99727 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.54■□□□□ 0.56
TIMP4Q99727 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
TIMP4Q99727 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.54■□□□□ 0.56
TIMP4Q99727 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TIMP4Q99727 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TIMP4Q99727 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.54■□□□□ 0.56
TIMP4Q99727 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TIMP4Q99727 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TIMP4Q99727 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.53■□□□□ 0.56
TIMP4Q99727 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.53■□□□□ 0.56
TIMP4Q99727 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
TIMP4Q99727 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
TIMP4Q99727 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
TIMP4Q99727 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TIMP4Q99727 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TIMP4Q99727 KRT18P68-201ENST00000392293 1000 ntBASIC18.53■□□□□ 0.56
TIMP4Q99727 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TIMP4Q99727 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TIMP4Q99727 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.53■□□□□ 0.56
TIMP4Q99727 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
TIMP4Q99727 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.53■□□□□ 0.56
TIMP4Q99727 TMEM191A-211ENST00000637163 1067 ntBASIC18.53■□□□□ 0.56
TIMP4Q99727 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TIMP4Q99727 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TIMP4Q99727 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
TIMP4Q99727 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.53■□□□□ 0.56
TIMP4Q99727 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TIMP4Q99727 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TIMP4Q99727 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TIMP4Q99727 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TIMP4Q99727 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TIMP4Q99727 AC121338.2-201ENST00000622535 1744 ntBASIC18.52■□□□□ 0.56
TIMP4Q99727 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
TIMP4Q99727 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.52■□□□□ 0.56
TIMP4Q99727 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TIMP4Q99727 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TIMP4Q99727 AC007225.1-201ENST00000566331 1836 ntBASIC18.52■□□□□ 0.56
TIMP4Q99727 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TIMP4Q99727 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
TIMP4Q99727 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.52■□□□□ 0.56
TIMP4Q99727 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.52■□□□□ 0.56
TIMP4Q99727 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.52■□□□□ 0.56
TIMP4Q99727 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TIMP4Q99727 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.52■□□□□ 0.56
TIMP4Q99727 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
TIMP4Q99727 AL589743.5-201ENST00000616611 1050 ntBASIC18.52■□□□□ 0.56
TIMP4Q99727 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TIMP4Q99727 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.52■□□□□ 0.56
TIMP4Q99727 AL162377.1-201ENST00000618844 1793 ntBASIC18.52■□□□□ 0.55
TIMP4Q99727 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TIMP4Q99727 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TIMP4Q99727 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TIMP4Q99727 PCDHAC2-203ENST00000615316 3011 ntBASIC18.52■□□□□ 0.55
TIMP4Q99727 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.51■□□□□ 0.55
TIMP4Q99727 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TIMP4Q99727 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.51■□□□□ 0.55
TIMP4Q99727 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.51■□□□□ 0.55
TIMP4Q99727 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TIMP4Q99727 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TIMP4Q99727 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TIMP4Q99727 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TIMP4Q99727 AC020907.5-201ENST00000624372 1936 ntBASIC18.51■□□□□ 0.55
TIMP4Q99727 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.51■□□□□ 0.55
TIMP4Q99727 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.51■□□□□ 0.55
TIMP4Q99727 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TIMP4Q99727 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
TIMP4Q99727 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.51■□□□□ 0.55
TIMP4Q99727 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
TIMP4Q99727 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.51■□□□□ 0.55
TIMP4Q99727 FAM201B-201ENST00000458407 597 ntBASIC18.51■□□□□ 0.55
TIMP4Q99727 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.51■□□□□ 0.55
TIMP4Q99727 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.51■□□□□ 0.55
TIMP4Q99727 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.51■□□□□ 0.55
TIMP4Q99727 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
TIMP4Q99727 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TIMP4Q99727 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
TIMP4Q99727 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TIMP4Q99727 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.51■□□□□ 0.55
TIMP4Q99727 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TIMP4Q99727 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.51■□□□□ 0.55
TIMP4Q99727 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TIMP4Q99727 CYP21A1P-202ENST00000354927 1481 ntBASIC18.51■□□□□ 0.55
TIMP4Q99727 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
TIMP4Q99727 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
TIMP4Q99727 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TIMP4Q99727 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TIMP4Q99727 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
TIMP4Q99727 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.5■□□□□ 0.55
TIMP4Q99727 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TIMP4Q99727 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms